Salmonella enterica subsp. enterica serovar Typhimurium R17.5474 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium R17.5474 RM systems
Ref: Chiou,C.S. et al. unpublished
REBASE ref # 34932
| Sequence length: | GenBank #: | |
| Chromosome: | 4,955,572 bp | CP100715 |
| plasmid pR17.5474_294k: | 294,171 bp | CP100716 |
REBASE acronym: Sen5474
Org_num: 60507
All begin NL730_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20110 | restriction endonuclease | |||
| 20115 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen5474ORF20120P |
| 20120 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen5474ORF20120P |
| 20125 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen5474ORF20120P |
| 20130 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.Sen5474DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2315 | DUF2556 family protein | |||
| 2320 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen5474ORF2320P |
| 2325 | DNA-binding transcriptional regulator Fis | |||
| 5435 | IS6-like element IS26 family transposase | |||
| 5440 | M | M.StyCORF187P (49% identity) | M.Sen5474ORF5440P | |
| 5445 | thermonuclease family protein | |||
| 6100 | Com family DNA-binding transcriptional | |||
| 6105 | M | M.SenYU39ORF1896P (100% identity) | M.Sen5474ORF6105P | |
| 6110 | ribosome-associated translation inhibitor RaiA | |||
| 9380 | PerC family transcriptional regulator | |||
| 9385 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen5474ORF9385P |
| 9390 | RusA family crossover junction | |||
| 20270 | BREX system P-loop protein BrxC | |||
| 20275 | RM | StyUK1IV (100% identity) | GATCAG | Sen5474ORF20275P |
| 20280 | AAA family ATPase | |||
| 22190 | LexA family transcriptional regulator | |||
| 22195 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen5474ORF22195P |
| 22200 | PerC family transcriptional regulator | |||
| plasmid pR17.5474_294k | ||||
| 24580 | 202 aa hypothetical protein | |||
| 24585 | M | M.YpsF1ORFBP (100% identity) | M.Sen5474ORF24585P | |
| 24590 | 48 aa hypothetical protein | |||
| 25170 | thermonuclease family protein | |||
| 25175 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen5474ORF25175P |
| 25180 | 55 aa hypothetical protein | |||
| 25875 | 277 aa hypothetical protein | |||
| 25880 | M | M.SenBL10ORFDP (100% identity) | M.Sen5474ORF25880P | |
| 25885 | DNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17800 | small effector SsaA | |||
| 17805 | R | StyUK1IP (99% identity) | CAGAG | Sen5474ORF17810P |
| 17810 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen5474ORF17810P |
| 17815 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20105 | BrnT family toxin | |||
| 20110 | R | StyUK1MrrP (100% identity) | Sen5474MrrP | |
| 20115 | type I restriction-modification system | |||