Salmonella enterica subsp. enterica serovar Mbandaka R17.0904 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Mbandaka R17.0904 RM systems
Ref: Chiou,cs. et al. unpublished
REBASE ref # 34932
| Sequence length: | GenBank #: | |
| Chromosome: | 4,760,001 bp | CP100670 |
| plasmid pR17.0904_99k: | 99,204 bp | CP100671 |
REBASE acronym: Sen0904
Org_num: 60499
All begin NL713_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2530 | endoribonuclease SymE | |||
| 2535 | S | S.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | S.Sen0904ORF2540P |
| 2540 | M | M.SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | M.Sen0904ORF2540P |
| 2545 | R | SenXB08ORF19780P (100% identity) | CACNNNNNNNRTRTC | Sen0904ORF2540P |
| 2550 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | replication endonuclease | |||
| 15 | M | M.SspS13ORF1655P (100% identity) | GTCGAC | M.Sen0904ORF15P |
| 20 | R | SspS13ORF1655P (100% identity) | GTCGAC | R1.Sen0904ORF15P |
| 25 | R | R1.SenXB08ORF22340P (100% identity) | GTCGAC | R2.Sen0904ORF15P |
| 30 | phage portal protein | |||
| 2380 | 97 aa hypothetical protein | |||
| 2385 | R | SenXB08ORF19940P (100% identity) | Sen0904ORF2385P | |
| 2390 | response regulator receiver domain | |||
| 2390 | response regulator receiver domain | |||
| 2395 | R | SenXB08ORF19920P (100% identity) | RCCGGY | Sen0904ORF2400P |
| 2400 | M | M.SenXB08ORF19920P (100% identity) | RCCGGY | M.Sen0904ORF2400P |
| 2405 | IS3 family transposase | |||
| 12620 | drug/metabolite exporter YedA | |||
| 12625 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen0904DcmP |
| 12630 | M | M.SenXB08DcmP (100% identity) | CCWGG | M.Sen0904DcmP |
| 12635 | phosphohydrolase | |||
| 16280 | 470 aa hypothetical protein | |||
| 16285 | M | M.SenXB08ORF5455P (100% identity) | GGTACC | M.Sen0904ORF16285P |
| 16290 | 371 aa hypothetical protein | |||
| 18735 | replication endonuclease | |||
| 18740 | M | M.SspZ54ORF6040P (100% identity) | GATC | M.Sen0904ORF18740P |
| 18745 | DUF3850 domain-containing protein | |||
| 20145 | ribulose-phosphate 3-epimerase | |||
| 20150 | M | M.StyTDamP (100% identity) | GATC | M.Sen0904DamP |
| 20155 | cell division protein DamX | |||
| plasmid pR17.0904_99k | ||||
| 23440 | recombination-associated protein RdgC | |||
| 23445 | M | M.EcoSHP24ORF26530P (100% identity) | M.Sen0904ORF23445P | |
| 23460 | tellurite/colicin resistance protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4835 | MFS transporter | |||
| 4840 | M | M.SenXB08ORF17480P (100% identity) | CAGAG | M.Sen0904ORF4840P |
| 4845 | R | SspA292ORF17210P (100% identity) | CAGAG | Sen0904ORF4840P |
| 4850 | small effector SsaA | |||
| plasmid pR17.0904_99k | ||||
| 23160 | maturation control protein | |||
| 23165 | R | SenSL0052ORF25975P (100% identity) | AGACC | Sen0904ORF23170P |
| 23170 | M | M.SenSL0052ORF25975P (100% identity) | AGACC | M.Sen0904ORF23170P |
| 23175 | modulator protein | |||