Salmonella enterica subsp. enterica serovar Typhimurium GD19PS1 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium GD19PS1 RM systems
Ref: Wang,J. unpublished
REBASE ref # 9334
| Sequence length: | GenBank #: | |
| Chromosome: | 4,963,890 bp | CP098834 |
| plasmid pYUGDPS1-1: | 241,147 bp | CP098835 |
REBASE acronym: SenPS1
Org_num: 59929
All begin NFH28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20460 | restriction endonuclease | |||
| 20465 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenPS1ORF20470P |
| 20470 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenPS1ORF20470P |
| 20475 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenPS1ORF20470P |
| 20480 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1810 | cell division protein DamX | |||
| 1815 | M | M.StyTDamP (100% identity) | GATC | M.SenPS1DamP |
| 1820 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenPS1ORF2310P |
| 2315 | DNA-binding transcriptional regulator Fis | |||
| 3225 | DUF2732 domain-containing protein | |||
| 3230 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.SenPS1ORF3230P |
| 3235 | replication endonuclease | |||
| 5620 | IS6-like element IS26 family transposase | |||
| 5625 | M | M.StyCORF187P (49% identity) | M.SenPS1ORF5625P | |
| 5630 | thermonuclease family protein | |||
| 6160 | ead/Ea22-like family protein | |||
| 6165 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.SenPS1ORF6165P |
| 6170 | DUF551 domain-containing protein | |||
| 9500 | PerC family transcriptional regulator | |||
| 9505 | M | M.SenA629ORF18155P (100% identity) | M.SenPS1ORF9505P | |
| 9510 | RusA family crossover junction | |||
| 9755 | phosphohydrolase | |||
| 9760 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenPS1DcmP |
| 9765 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenPS1DcmP |
| 9770 | drug/metabolite exporter YedA | |||
| plasmid pYUGDPS1-1 | ||||
| 24420 | 202 aa hypothetical protein | |||
| 24425 | M | M.YpsF1ORFBP (100% identity) | M.SenPS1ORF24425P | |
| 24430 | 48 aa hypothetical protein | |||
| 25035 | thermonuclease family protein | |||
| 25040 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.SenPS1ORF25040P |
| 25045 | 55 aa hypothetical protein | |||
| 25560 | 277 aa hypothetical protein | |||
| 25565 | M | M.YpsF1ORFDP (100% identity) | GATC | M.SenPS1ORF25565P |
| 25570 | DNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17905 | small effector SsaA | |||
| 17910 | R | StyUK1IP (99% identity) | CAGAG | SenPS1ORF17915P |
| 17915 | M | M.StyUK1I (100% identity) | CAGAG | M.SenPS1ORF17915P |
| 17920 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20455 | BrnT family toxin | |||
| 20460 | R | StyUK1MrrP (100% identity) | SenPS1MrrP | |
| 20465 | type I restriction-modification system | |||