Shigella species PIB |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella species PIB RM systems
Ref: Chen,X. and Zhu,M.-S. unpublished
REBASE ref # 34780
| Sequence length: | GenBank #: | |
| Chromosome: | 4,743,616 bp | CP090402 |
| plasmid pPIB-1: | 98,997 bp | CP090403 |
| plasmid pPIB-2: | 87,994 bp | CP090404 |
REBASE acronym: SspPIB
Org_num: 59933
All begin LXH19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19360 | N-6 DNA methylase | |||
| 19365 | R | EcoU105ORFFP (100% identity) | CCCNNNNNTTGC | SspPIBORF19375P |
| 19370 | restriction endonuclease subunit S | |||
| 19375 | M | M2.EcoU105ORFFP (99% identity) | CCCNNNNNTTGC | M2.SspPIBORF19375P |
| 19380 | M | M1.EcoU105ORFFP (93% identity) | CCCNNNNNTTGC | M1.SspPIBORF19375P |
| 19385 | 120 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1835 | cell division protein DamX | |||
| 1840 | M | M.SflSTLE3DamP (100% identity) | GATC | M.SspPIBDamP |
| 1845 | ribulose-phosphate 3-epimerase | |||
| 2435 | DUF2556 family protein | |||
| 2440 | M | M.EcoU105ORFAP (100% identity) | ATGCAT | M.SspPIBORF2440P |
| 2445 | DNA-binding transcriptional regulator Fis | |||
| 6325 | DUF1382 family protein | |||
| 6330 | M | M.Ecoi648ORF1402P (98% identity) | GATC | M.SspPIBORF6330P |
| 6335 | PerC family transcriptional regulator | |||
| 9155 | phosphohydrolase | |||
| 9160 | M | M.SflFF24DcmP (100% identity) | CCWGG | M.SspPIBDcmP |
| 9165 | V | V.EcoU105DcmP (100% identity) | V.SspPIBDcmP | |
| 9170 | drug/metabolite exporter YedA | |||
| 14575 | replication endonuclease | |||
| 14580 | M | M.Eco2461ORF8995P (100% identity) | GATC | M.SspPIBORF14580P |
| 14585 | TraR/DksA family transcriptional regulator | |||
| plasmid pPIB-1 | ||||
| 22640 | 73 aa hypothetical protein | |||
| 22645 | M | M.StyR64ORFAP (100% identity) | M.SspPIBORF22645P | |
| 22650 | 103 aa hypothetical protein | |||
| plasmid pPIB-2 | ||||
| 23075 | 103 aa hypothetical protein | |||
| 23080 | M | M.Sso7924ORF5362P (100% identity) | M.SspPIBORF23080P | |
| 23085 | 73 aa hypothetical protein | |||