Pseudomonas amygdali pv. loropetali AAC |
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Putative Pseudomonas amygdali pv. loropetali AAC RM systems
Ref: Copes,W.E. et al. Plant Health Prog 20 (4), 270-277 (2019)
REBASE ref # 34458
Complete sequence: 6,241,584 bp
GenBank #: CP089282
REBASE acronym: PamAAC
Org_num: 57992
All begin LT107_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4060 | helix-turn-helix domain-containing protein | |||
| 4065 | R | Psy1702ORFEP (99% identity) | PamAACORF4070P | |
| 4070 | M | M.PspSt316ORF51830P (95% identity) | M.PamAACORF4070P | |
| 4075 | S | S.Xor15ORF4965P (42% identity) | S1.PamAACORF4070P | |
| 4080 | IS5-like element ISPsy2 family transposase | |||
| 4085 | S | S.PspFIT81ORF4815P (37% identity) | S2.PamAACORF4070P | |
| 4090 | DUF4113 domain-containing protein | |||
| 26870 | IS30 family transposase | |||
| 26875 | M | M.Bbr632ORF915P (70% identity) | M.PamAACORF26875P | |
| 26880 | S | S.Axy11015ORF47870P (40% identity) | S.PamAACORF26875P | |
| 26885 | 152 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2875 | 236 aa hypothetical protein | |||
| 2880 | M | M1.Psy17ORF3170P (98% identity) | M1.PamAACORF2880P | |
| 2885 | M | M2.Psy17ORF3170P (99% identity) | M2.PamAACORF2880P | |
| 2890 | RM | Psyy1ORF2600P (99% identity) | PamAACORF2880P | |
| 2895 | TIGR03759 family integrating conjugative element | |||
| 10075 | glycoside hydrolase family 19 protein | |||
| 10080 | M | M.Psa722ORFGP (88% identity) | M.PamAACORF10080P | |
| 10085 | 391 aa hypothetical protein | |||
| 10090 | ATP-binding protein | |||
| 10095 | M | M.RsoFJ1003ORFAP (59% identity) | M.PamAACORF10095P | |
| 10100 | tyrosine-type recombinase/integrase | |||
| 14345 | 72 aa hypothetical protein | |||
| 14350 | M | M.Psy107ORFBP (86% identity) | M.PamAACORF14350P | |
| 14355 | DUF2514 domain-containing protein | |||
| 16250 | 214 aa hypothetical protein | |||
| 16255 | M | M.PsyUB303ORF23915P (98% identity) | M.PamAACORF16255P | |
| 16260 | glycoside hydrolase family 19 protein | |||
| 20200 | DEAD/DEAH box helicase | |||
| 20205 | RM | Pams2250ORF4865P (99% identity) | PamAACORF20205P | |
| 20210 | TIGR03757 family integrating conjugative element | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19725 | 598 aa hypothetical protein | |||
| 19730 | R | Pams11528McrCP (97% identity) | PamAACMcrCP | |
| 19735 | R | Psy107McrBP (99% identity) | PamAACMcrBP | |
| 19740 | glycine zipper family protein | |||