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Putative Helicobacter pylori Hpfe028 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,488 bp
GenBank #: CP094145
REBASE acronym: Hpyfe28
Org_num: 57286
All begin MPG51_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
4260 | outer membrane beta-barrel protein HofF | |||
4265 | S | S.Hpy14039ORFHP (93% identity) | AACNNNNNRTC | S.Hpyfe28ORF4265P |
4270 | cadmium-translocating P-type ATPase | |||
4550 | hydroxyethylthiazole kinase | |||
4555 | R | Hpyfe110ORF4070P (97% identity) | AAGNNNNNNTAG | Hpyfe28ORF4565P |
4560 | S | S.HpyKG4XIX (94% identity) | AAGNNNNNNTAG | S.Hpyfe28ORF4565P |
4565 | M | M.HpyDO9XIII (90% identity) | AAGNNNNNNTAG | M.Hpyfe28ORF4565P |
4570 | phosphatase PAP2 family protein | |||
4830 | type I restriction endonuclease | |||
4835 | R | Hpy1139ORFPP (84% identity) | CTANNNNNNTC | Hpyfe28ORF4840P |
4840 | M | M.Hpyfe37ORF4850P (96% identity) | CTANNNNNNTC | M.Hpyfe28ORF4840P |
4845 | S | S.Hpyfe97ORF5205P (98% identity) | CTANNNNNNTC | S.Hpyfe28ORF4840P |
4855 | RNA degradosome polyphosphate kinase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
50 | type III restriction-modification system | |||
55 | RM | HpyJSHR6ORF100P (88% identity) | Hpyfe28ORF55P | |
60 | 183 aa hypothetical protein | |||
280 | ComF family protein | |||
285 | RM | Hpyfe15ORF270P (99% identity) | CYANNNNNNTTC | Hpyfe28ORF285P |
290 | S | S.Hpyfe32ORF290P (96% identity) | S.Hpyfe28ORF285P | |
295 | DNA polymerase I | |||
1395 | serine O-acetyltransferase | |||
1400 | R | HpyTW22IP (95% identity) | CATG | Hpyfe28ORF1405P |
1405 | M | M.Hpyfe55ORF1430P (99% identity) | CATG | M.Hpyfe28ORF1405P |
1410 | HAD family hydrolase | |||
1615 | carbon starvation protein A | |||
1620 | R | HpyU301VIP (100% identity) | CTRYAG | Hpyfe28ORF1625P |
1625 | M | M.HpyK005XI (99% identity) | CTRYAG | M.Hpyfe28ORF1625P |
1630 | outer membrane beta-barrel protein HofH | |||
1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
1860 | M | M.Hpyfe123ORF1860P (99% identity) | GCGC | M.Hpyfe28ORF1860P |
1865 | 144 aa hypothetical protein | |||
2035 | Laminin subunit alpha-2 precursor | |||
2040 | R | HpyK006XIVP (98% identity) | TCNNGA | Hpyfe28ORF2045P |
2045 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe28ORF2045P |
2050 | acetyl-CoA carboxylase biotin carboxylase | |||
2690 | ATP-dependent helicase | |||
2695 | M | M.HpyU425IX (98% identity) | GTNNAC | M.Hpyfe28ORF2695P |
2700 | R | Hpyfe38ORF2685P (97% identity) | GTNNAC | Hpyfe28ORF2695P |
2705 | flagellar hook protein FlgE | |||
2895 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2900 | M | M.Hpyfe125ORF2815P (99% identity) | GTAC | M.Hpyfe28ORF2900P |
2905 | R | HpyJA103VIP (97% identity) | GTAC | Hpyfe28ORF2900P |
2910 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
3750 | outer membrane protein | |||
3755 | RM | Hpyfe61ORF4005P (92% identity) | Hpyfe28ORF3755P | |
3760 | (Fe-S)-binding protein | |||
4715 | catalase | |||
4720 | R | HpyUM065ORF7975P (98% identity) | ACGT | Hpyfe28ORF4725P |
4725 | M | M.HpyJA115ORF2285P (99% identity) | ACGT | M.Hpyfe28ORF4725P |
4730 | GIY-YIG nuclease family protein | |||
4725 | DNA cytosine methyltransferase | |||
4730 | R | Hpyfe24ORF4945P (100% identity) | ACNGT | Hpyfe28ORF4735P |
4735 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe28ORF4735P |
4740 | translational GTPase TypA | |||
4745 | lipopolysaccharide heptosyltransferase family | |||
4750 | M | M.HpyK049III (98% identity) | ATTAAT | M.Hpyfe28ORF4750P |
4755 | Hop family outer membrane protein HopJ/HopK | |||
5460 | 125 aa hypothetical protein | |||
5465 | M | M.HpyTW23VII (99% identity) | CTNAG | M.Hpyfe28ORF5465P |
5470 | R | HpyK014VIIP (98% identity) | CTNAG | Hpyfe28ORF5465P |
5475 | polysaccharide deacetylase | |||
5705 | AAA family ATPase | |||
5710 | M | M.Hpyfe71ORF5870P (100% identity) | CCGG | M.Hpyfe28ORF5710P |
5715 | R | HpyCA23IVP (98% identity) | CCGG | Hpyfe28ORF5710P |
5720 | 204 aa hypothetical protein | |||
5720 | 204 aa hypothetical protein | |||
5725 | M | M.Hpyfe77ORF1855P (100% identity) | TCGA | M.Hpyfe28ORF5725P |
5730 | exodeoxyribonuclease VII large subunit | |||
6140 | pseudaminic acid synthase | |||
6145 | R | R2.HpyNP04ORF1110P (97% identity) | R2.Hpyfe28ORF6155P | |
6150 | R | R1.HpyFD506ORFL1P (97% identity) | R1.Hpyfe28ORF6155P | |
6155 | M | M2.HpyZ004ORF860P (89% identity) | M1.Hpyfe28ORF6155P | |
6160 | M | M.HpyML2ORFJP (98% identity) | M2.Hpyfe28ORF6155P | |
6165 | elongation factor P | |||
6545 | alpha-1,2-fucosyltransferase | |||
6550 | M | M.Hpyfe99ORF6980P (99% identity) | GATC | M.Hpyfe28ORF6550P |
6555 | R | Hpyfe99ORF6980P (100% identity) | GATC | Hpyfe28ORF6550P |
6565 | ACP S-malonyltransferase | |||
6710 | DNA cytosine methyltransferase | |||
6715 | R | Hpyfe12ORF7025P (97% identity) | CCTC | Hpyfe28ORF6720P |
6720 | M | M1.Hpyfe33ORF6780P (98% identity) | CCTC | M1.Hpyfe28ORF6720P |
6725 | M | M1.HpySG15V (98% identity) | CCTC | M2.Hpyfe28ORF6720P |
6730 | agmatine deiminase | |||
6770 | S41 family peptidase | |||
6775 | RM | HpyK118ORF270P (89% identity) | Hpyfe28ORF6775P | |
6780 | carboxylating nicotinate-nucleotide | |||
7290 | DUF5343 domain-containing protein | |||
7295 | M | M.Hpy78ORF1530P (98% identity) | M.Hpyfe28ORF7295P | |
7300 | type II restriction endonuclease | |||
7295 | DNA cytosine methyltransferase | |||
7300 | R | Hpyfe99ORF7775P (98% identity) | TGCA | Hpyfe28ORF7305P |
7305 | M | M.HpyID2VIII (99% identity) | TGCA | M.Hpyfe28ORF7305P |
7310 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyUM038ORF805P (98% identity) | M.Hpyfe28ORF40P | |
50 | R | HpyT029ORF7135P (97% identity) | Hpyfe28ORF40P | |
55 | Eco57I restriction-modification methylase | |||
625 | biotin synthase | |||
630 | R | HpyOK303ORFYP (93% identity) | Hpyfe28ORF635P | |
635 | M | M.HpyF227ORFXP (97% identity) | M.Hpyfe28ORF635P | |
640 | DNA/RNA non-specific endonuclease | |||
6830 | copper response regulator transcription factor | |||
6835 | M | M.Hpyfe3ORF6920P (97% identity) | M.Hpyfe28ORF6835P | |
6840 | R | HpySG32ORF200P (95% identity) | Hpyfe28ORF6835P | |
6845 | rod shape-determining protein MreC | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2940 | type I glutamate--ammonia ligase | |||
2945 | R | HpyJA108GmrSDP (90% identity) | Hpyfe28GmrSD2P | |
2950 | 50S ribosomal protein L9 | |||
3525 | sel1 repeat family protein | |||
3530 | R | HpyK009GmrSD2P (95% identity) | Hpyfe28GmrSDP | |
3535 | NAD(P)H-dependent oxidoreductase |