Helicobacter pylori Hpfe064 |
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Putative Helicobacter pylori Hpfe064 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,615,760 bp
GenBank #: CP094119
REBASE acronym: Hpyfe64
Org_num: 57311
All begin MPG78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3510 | DNA cytosine methyltransferase | |||
| 3515 | M | M.HpyUM023ORF5765P (97% identity) | M.Hpyfe64ORF3515P | |
| 3520 | S | S.HpyCOL206ORF4025P (94% identity) | S.Hpyfe64ORF3515P | |
| 3525 | R | HpyTW24ORF4295P (97% identity) | Hpyfe64ORF3515P | |
| 3530 | hydroxyethylthiazole kinase | |||
| 3805 | cadmium-translocating P-type ATPase | |||
| 3810 | S | S.HpyP105ORF3570P (97% identity) | CAYNNNNNNTTG | S.Hpyfe64ORF3810P |
| 3815 | outer membrane beta-barrel protein HofF | |||
| 7695 | M48 family metallopeptidase | |||
| 7700 | R | HpyK044ORF555P (96% identity) | Hpyfe64ORF7705P | |
| 7705 | M | M.HpyF227ORFBP (96% identity) | M.Hpyfe64ORF7705P | |
| 7710 | CAAX protease | |||
| 7715 | S | S.Hpyfe19ORF7830P (46% identity) | S.Hpyfe64ORF7705P | |
| 7720 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | Hpy928ORFBP (92% identity) | Hpyfe64ORF50P | |
| 55 | transcription termination factor NusA | |||
| 120 | outer membrane protein | |||
| 125 | R | HpyKA2ORF7405P (94% identity) | Hpyfe64ORF125P | |
| 130 | phospholipase D-like domain-containing protein | |||
| 260 | ComF family protein | |||
| 265 | RM | HpyH137ORF285P (98% identity) | CYANNNNNNTTC | Hpyfe64ORF265P |
| 270 | S | S.HpyU205XIV (68% identity) | S.Hpyfe64ORF265P | |
| 275 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | Hpyfe58ORF1445P (93% identity) | CATG | Hpyfe64ORF1415P |
| 1415 | M | M.HpyQ56ORFPP (92% identity) | CATG | M.Hpyfe64ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1660 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1665 | M | M.HpyJ013VIII (97% identity) | GATC | M.Hpyfe64ORF1665P |
| 1670 | R | Hpyfe13ORF6650P (96% identity) | GATC | Hpyfe64ORF1665P |
| 1680 | ACP S-malonyltransferase | |||
| 1925 | elongation factor P | |||
| 1930 | M | M.HpyJA115ORF880P (97% identity) | M.Hpyfe64ORF1930P | |
| 1935 | R | Hpy30McrBP (99% identity) | R1.Hpyfe64ORF1930P | |
| 1940 | R | R2.HpyK047ORF930P (99% identity) | R2.Hpyfe64ORF1930P | |
| 1945 | pseudaminic acid synthase | |||
| 2345 | exodeoxyribonuclease VII large subunit | |||
| 2350 | M | M.Hpyfe93ORF5890P (99% identity) | TCGA | M.Hpyfe64ORF2350P |
| 2355 | 204 aa hypothetical protein | |||
| 2355 | 204 aa hypothetical protein | |||
| 2360 | R | Hpyfe63ORF5755P (95% identity) | CCGG | Hpyfe64ORF2365P |
| 2365 | M | M.Hpyfe93ORF5875P (99% identity) | CCGG | M.Hpyfe64ORF2365P |
| 2370 | AAA family ATPase | |||
| 3315 | Hop family outer membrane protein HopJ/HopK | |||
| 3320 | M | M.HpyK049III (98% identity) | ATTAAT | M.Hpyfe64ORF3320P |
| 3325 | lipopolysaccharide heptosyltransferase family | |||
| 3330 | translational GTPase TypA | |||
| 3335 | M | M.HpyV002II (98% identity) | ACNGT | M.Hpyfe64ORF3335P |
| 3340 | R | Hpy2ALORF5675P (96% identity) | ACNGT | Hpyfe64ORF3335P |
| 3345 | DNA cytosine methyltransferase | |||
| 3340 | GIY-YIG nuclease family protein | |||
| 3345 | M | M.HpyMA20ORF2415P (98% identity) | ACGT | M.Hpyfe64ORF3345P |
| 3350 | R | HpyFD568ORFLP (98% identity) | ACGT | Hpyfe64ORF3345P |
| 3355 | catalase | |||
| 3500 | phosphatase PAP2 family protein | |||
| 3505 | R | Hpy271ORFBP (97% identity) | GGCC | Hpyfe64ORF3510P |
| 3510 | M | M.Hpyfe110ORF4075P (99% identity) | GGCC | M.Hpyfe64ORF3510P |
| 3515 | type I restriction-modification system subunit | |||
| 4340 | (Fe-S)-binding protein | |||
| 4345 | RM | Hpyfe114ORF3790P (47% identity) | Hpyfe64ORF4345P | |
| 4350 | outer membrane protein | |||
| 4430 | 3-5 exonuclease | |||
| 4435 | M | M.HpyOK306ORFYP (99% identity) | M.Hpyfe64ORF4435P | |
| 4440 | R | HpyK016ORF3880P (100% identity) | GGNNCC | Hpyfe64ORF4435P |
| 4445 | 3-5 exonuclease | |||
| 5210 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5215 | R | Hpy28ORF507P (98% identity) | GTAC | Hpyfe64ORF5220P |
| 5220 | M | M.HpyK044VIII (99% identity) | GTAC | M.Hpyfe64ORF5220P |
| 5225 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5410 | flagellar hook protein FlgE | |||
| 5415 | R | Hpyfe7ORF2690P (97% identity) | Hpyfe64ORF5420P | |
| 5420 | M | M.Hpy13AEK8ORFTP (53% identity) | M.Hpyfe64ORF5420P | |
| 5425 | ATP-dependent helicase | |||
| 6070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6075 | M | M.HpyK117XII (100% identity) | TCNNGA | M.Hpyfe64ORF6075P |
| 6080 | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | Hpyfe64ORF6075P |
| 6085 | Laminin subunit alpha-2 precursor | |||
| 6255 | 144 aa hypothetical protein | |||
| 6260 | M | M.HpyNP04XVI (97% identity) | GCGC | M.Hpyfe64ORF6260P |
| 6265 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6985 | sodium/proline symporter PutP | |||
| 6990 | R | Hpyfe33ORF6780P (97% identity) | CCTC | Hpyfe64ORF6995P |
| 6995 | M | M1.Hpyfe114ORF6815P (99% identity) | CCTC | M1.Hpyfe64ORF6995P |
| 7000 | M | M1.HpySG15V (98% identity) | CCTC | M2.Hpyfe64ORF6995P |
| 7005 | agmatine deiminase | |||
| 7045 | S41 family peptidase | |||
| 7050 | R | Hpyfe29ORF6865P (98% identity) | GANTC | Hpyfe64ORF7055P |
| 7055 | M | M.Hpyfe5ORF7015P (100% identity) | GANTC | M.Hpyfe64ORF7055P |
| 7060 | 633 aa hypothetical protein | |||
| 7055 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyK023ORF285P (86% identity) | Hpyfe64ORF7060P | |
| 7070 | carboxylating nicotinate-nucleotide | |||
| 7120 | copper response regulator transcription factor | |||
| 7125 | R | Hpy928ORFFP (99% identity) | GAAGA | Hpyfe64ORF7130P |
| 7130 | M | M1.Hpybs2ORFNP (100% identity) | GAAGA | M1.Hpyfe64ORF7130P |
| 7135 | M | M2.HpyLIM10VI (99% identity) | GAAGA | M2.Hpyfe64ORF7130P |
| 7140 | restriction endonuclease | |||
| 7595 | 90 aa hypothetical protein | |||
| 7600 | R | HpySG12XIP (98% identity) | TGCA | Hpyfe64ORF7605P |
| 7605 | M | M.Hpy1291ORF15370P (99% identity) | TGCA | M.Hpyfe64ORF7605P |
| 7610 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy274ORF1706P (96% identity) | M.Hpyfe64ORF40P | |
| 45 | R | Hpyfe101ORF40P (96% identity) | Hpyfe64ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 610 | biotin synthase | |||
| 615 | R | HpySG17ORF1010P (95% identity) | Hpyfe64ORF620P | |
| 620 | M | M.HpyK014XIII (95% identity) | M.Hpyfe64ORF620P | |
| 625 | ABC transporter ATP-binding protein/permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4590 | NAD(P)H-dependent oxidoreductase | |||
| 4595 | R | HpyK042GmrSD2P (95% identity) | Hpyfe64GmrSDP | |
| 4600 | sel1 repeat family protein | |||
| 5170 | 50S ribosomal protein L9 | |||
| 5175 | R | HpySG14GmrSDP (90% identity) | Hpyfe64GmrSD2P | |
| 5180 | type I glutamate--ammonia ligase | |||