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Putative Helicobacter pylori Hpfe080 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,563,024 bp
GenBank #: CP094099
REBASE acronym: Hpyfe80
Org_num: 57326
All begin MPG36_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
4580 | hydroxyethylthiazole kinase | |||
4585 | R | HpySG13ORF4085P (96% identity) | Hpyfe80ORF4595P | |
4590 | S | S.HpyMM08ORF4005P (97% identity) | S.Hpyfe80ORF4595P | |
4595 | M | M.Hpyfe81ORF2925P (96% identity) | M.Hpyfe80ORF4595P | |
4600 | phosphatase PAP2 family protein | |||
4860 | type I restriction endonuclease | |||
4865 | R | HpyMKM1ORF464P (69% identity) | CCANNNNNNTC | Hpyfe80ORF4870P |
4870 | M | M.Hpyfe72ORF4875P (97% identity) | CCANNNNNNTC | M.Hpyfe80ORF4870P |
4875 | S | S.HpyCA6III (98% identity) | CCANNNNNNTC | S.Hpyfe80ORF4870P |
4885 | RNA degradosome polyphosphate kinase | |||
7445 | M48 family metallopeptidase | |||
7450 | R | Hpyfe23ORF7685P (97% identity) | CRTANNNNNNNTC | Hpyfe80ORF7455P |
7455 | M | M.HpyJA109ORF7240P (94% identity) | CRTANNNNNNNTC | M.Hpyfe80ORF7455P |
7460 | CAAX protease | |||
7465 | S | S.HpyTW06ORF7265P (95% identity) | CRTANNNNNNNTC | S.Hpyfe80ORF7455P |
7470 | FAD-dependent thymidylate synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | 713 aa hypothetical protein | |||
60 | RM | HpyTW03XVI (93% identity) | Hpyfe80ORF60P | |
65 | transcription termination factor NusA | |||
130 | outer membrane protein | |||
135 | R | Hpy5086ORF1440P (97% identity) | CCATC | Hpyfe80ORF140P |
140 | M | M1.Hpyfe56ORF140P (99% identity) | CCATC | M1.Hpyfe80ORF140P |
145 | M | M2.Hpyfe88ORF155P (98% identity) | CCATC | M2.Hpyfe80ORF140P |
150 | LptF/LptG family permease | |||
275 | ComF family protein | |||
280 | RM | Hpyfe66ORF270P (97% identity) | CYANNNNNNTTC | Hpyfe80ORF280P |
285 | S | S.HpyTW03ORF6950P (96% identity) | S.Hpyfe80ORF280P | |
290 | DNA polymerase I | |||
1395 | serine O-acetyltransferase | |||
1400 | R | HpyF210ORF1198P (88% identity) | CATG | Hpyfe80ORF1405P |
1405 | M | M.HpyK25I (97% identity) | CATG | M.Hpyfe80ORF1405P |
1410 | HAD family hydrolase | |||
1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
1860 | M | M.HpyUM111ORF6900P (98% identity) | GCGC | M.Hpyfe80ORF1860P |
1865 | 144 aa hypothetical protein | |||
2035 | Laminin subunit alpha-2 precursor | |||
2040 | R | Hpyfe22ORF2065P (99% identity) | TCNNGA | Hpyfe80ORF2045P |
2045 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe80ORF2045P |
2050 | acetyl-CoA carboxylase biotin carboxylase | |||
2705 | ATP-dependent helicase | |||
2710 | M | M.Hpyfe115ORF2725P (98% identity) | GTNNAC | M.Hpyfe80ORF2710P |
2715 | R | Hpyfe101ORF2705P (95% identity) | GTNNAC | Hpyfe80ORF2710P |
2720 | flagellar hook protein FlgE | |||
2905 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2910 | M | M.Hpyfe71ORF3060P (99% identity) | GTAC | M.Hpyfe80ORF2910P |
2915 | R | HpySG08XIIP (98% identity) | GTAC | Hpyfe80ORF2910P |
2920 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
3710 | (Fe-S)-binding protein | |||
3715 | RM | Hpyfe13ORF3910P (92% identity) | Hpyfe80ORF3715P | |
3720 | outer membrane protein | |||
4750 | catalase | |||
4755 | R | Hpyfe106ORF4905P (98% identity) | ACGT | Hpyfe80ORF4760P |
4760 | M | M.HpyK101ORF2295P (99% identity) | ACGT | M.Hpyfe80ORF4760P |
4765 | GIY-YIG nuclease family protein | |||
4760 | DNA cytosine methyltransferase | |||
4765 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe80ORF4770P |
4770 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe80ORF4770P |
4775 | translational GTPase TypA | |||
4780 | lipopolysaccharide heptosyltransferase family | |||
4785 | M | M.HpyK029II (99% identity) | ATTAAT | M.Hpyfe80ORF4785P |
4790 | Hop family outer membrane protein HopJ/HopK | |||
5300 | group I intron-associated PD-(D/E)XK | |||
5305 | M | M.Hpyfe99ORF5630P (99% identity) | GCNGC | M.Hpyfe80ORF5305P |
5310 | translation elongation factor 4 | |||
5500 | 119 aa hypothetical protein | |||
5505 | M | M.Hpyfe78ORF1470P (99% identity) | CTNAG | M.Hpyfe80ORF5505P |
5510 | R | HpyT029VIP (98% identity) | CTNAG | Hpyfe80ORF5505P |
5515 | polysaccharide deacetylase | |||
5745 | AAA family ATPase | |||
5750 | M | M.HpyTW08V (99% identity) | CCGG | M.Hpyfe80ORF5750P |
5755 | R | Hpyfe118ORF5980P (96% identity) | CCGG | Hpyfe80ORF5750P |
5760 | exodeoxyribonuclease VII large subunit | |||
6175 | LlaJI family restriction endonuclease | |||
6180 | R | R1.HpyCHN10ORF5790P (97% identity) | Hpyfe80ORF6185P | |
6185 | M | M2.HpyTW01ORF900P (98% identity) | M1.Hpyfe80ORF6185P | |
6190 | M | M1.HpyGE16ORF875P (98% identity) | M2.Hpyfe80ORF6185P | |
6195 | elongation factor P | |||
6530 | methyl-accepting chemotaxis protein TlpB | |||
6535 | M | M.HpyOK316ORFTP (99% identity) | M.Hpyfe80ORF6535P | |
6540 | R | Hpyfe81ORF1020P (100% identity) | Hpyfe80ORF6535P | |
6545 | glycosyltransferase | |||
6590 | alpha-(1,2)-fucosyltransferase FutC1 | |||
6595 | M | M.HpyJSHR3ORF2930P (98% identity) | GATC | M.Hpyfe80ORF6595P |
6600 | R | HpySG09VIIP (96% identity) | GATC | Hpyfe80ORF6595P |
6610 | ACP S-malonyltransferase | |||
6755 | sodium/proline symporter PutP | |||
6760 | M | M1.Hpyfe36ORF6790P (99% identity) | M1.Hpyfe80ORF6760P | |
6765 | M | M.Hpy334ORFAP (99% identity) | CCTC | M2.Hpyfe80ORF6760P |
6770 | agmatine deiminase | |||
6810 | S41 family peptidase | |||
6820 | RM | HpyJA105ORF635P (89% identity) | Hpyfe80ORF6820P | |
6825 | carboxylating nicotinate-nucleotide | |||
6875 | copper response regulator transcription factor | |||
6880 | R | Hpy38ORF38P (99% identity) | GAAGA | Hpyfe80ORF6885P |
6885 | M | M1.Hpyfe93ORF7110P (99% identity) | GAAGA | M1.Hpyfe80ORF6885P |
6890 | M | M2.Hpyfe82ORF7075P (99% identity) | GAAGA | M2.Hpyfe80ORF6885P |
6895 | site-specific DNA-methyltransferase | |||
7355 | 131 aa hypothetical protein | |||
7360 | R | HpyOK308ORFGP (98% identity) | TGCA | Hpyfe80ORF7365P |
7365 | M | M.HpySG12XI (99% identity) | TGCA | M.Hpyfe80ORF7365P |
7370 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.Hpyfe59ORF40P (98% identity) | M.Hpyfe80ORF40P | |
50 | R | Hpyfe89ORF40P (97% identity) | Hpyfe80ORF40P | |
55 | 713 aa hypothetical protein | |||
625 | biotin synthase | |||
630 | R | Hpyfe92ORF650P (95% identity) | Hpyfe80ORF635P | |
635 | M | M.HpyF227ORFXP (98% identity) | M.Hpyfe80ORF635P | |
640 | DNA/RNA non-specific endonuclease | |||
6890 | site-specific DNA-methyltransferase | |||
??? | M | M.Hpyfe32ORF7095P (98% identity) | M.Hpyfe80ORF6895P | |
6900 | R | Hpybs1ORFLP (97% identity) | Hpyfe80ORF6895P | |
6905 | rod shape-determining protein MreC | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2955 | type I glutamate--ammonia ligase | |||
2960 | R | Hpy51NGmrSDP (85% identity) | Hpyfe80GmrSDP | |
2965 | 50S ribosomal protein L9 | |||
3525 | sel1 repeat family protein | |||
3530 | R | HpySG24GmrSD2P (97% identity) | Hpyfe80GmrSD2P | |
3535 | NAD(P)H-dependent oxidoreductase |