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Putative Helicobacter pylori Hpfe125 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,553,667 bp
GenBank #: CP094054
REBASE acronym: Hpyfe125
Org_num: 57359
All begin MPF85_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2605 | RNA degradosome polyphosphate kinase | |||
2615 | S | S.HpyK033ORF2445P (98% identity) | CTANNNNNNTTA | S.Hpyfe125ORF2620P |
2620 | M | M.Hpyfe7ORF4880P (98% identity) | CTANNNNNNTTA | M.Hpyfe125ORF2620P |
2625 | R | Hpyfe33ORF4885P (96% identity) | CTANNNNNNTTA | Hpyfe125ORF2620P |
2630 | type I restriction endonuclease | |||
4485 | hydroxyethylthiazole kinase | |||
4490 | R | HpyML1ORFXP (97% identity) | CCANNNNNNRTAY | Hpyfe125ORF4500P |
4495 | S | S.Hpyfe110ORF3765P (98% identity) | CCANNNNNNRTAY | S.Hpyfe125ORF4500P |
4500 | M | M.Hpyfe102ORF3145P (97% identity) | CCANNNNNNRTAY | M.Hpyfe125ORF4500P |
4505 | DNA cytosine methyltransferase | |||
7430 | M48 family metallopeptidase | |||
7435 | R | Hpyfe7ORF7500P (99% identity) | Hpyfe125ORF7440P | |
7440 | M | M.Hpyfe7ORF7500P (99% identity) | M.Hpyfe125ORF7440P | |
7445 | S | S.Hpy3192ORF400P (48% identity) | S.Hpyfe125ORF7440P | |
7450 | 62 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | type III restriction-modification system | |||
50 | RM | Hpyfe7ORF50P (90% identity) | Hpyfe125ORF50P | |
55 | transcription termination factor NusA | |||
255 | ComF family protein | |||
260 | RM | HpyKG5ORF6975P (99% identity) | CYANNNNNNTTC | Hpyfe125ORF260P |
265 | S | S1.Hpyfe7ORF260P (99% identity) | S1.Hpyfe125ORF260P | |
270 | S | S2.Hpyfe7ORF260P (89% identity) | S2.Hpyfe125ORF260P | |
275 | DNA polymerase I | |||
725 | agmatine/peptidylarginine deiminase | |||
730 | M | M2.Hpyfe7ORF6770P (100% identity) | CCTC | M1.Hpyfe125ORF730P |
735 | M | M1.Hpyfe7ORF6770P (99% identity) | M2.Hpyfe125ORF730P | |
740 | sodium/proline symporter PutP | |||
930 | HTH domain-containing protein | |||
935 | M | M.Hpyfe7ORF6570P (98% identity) | GATC | M.Hpyfe125ORF935P |
940 | alpha-(1,2)-fucosyltransferase FutC1 | |||
1730 | exodeoxyribonuclease VII large subunit | |||
1735 | M | M.Hpyfe7ORF5760P (99% identity) | TCGA | M.Hpyfe125ORF1735P |
1740 | 203 aa hypothetical protein | |||
1740 | 203 aa hypothetical protein | |||
1745 | R | Hpyfe7ORF5745P (100% identity) | CCGG | Hpyfe125ORF1750P |
1750 | M | M.HpyK036IV (100% identity) | CCGG | M.Hpyfe125ORF1750P |
1755 | AAA family ATPase | |||
2180 | translation elongation factor 4 | |||
2185 | M | M.Hpyfe7ORF5310P (100% identity) | GCNGC | M.Hpyfe125ORF2185P |
2190 | 67 aa hypothetical protein | |||
2700 | Hop family outer membrane protein HopJ/HopK | |||
2705 | M | M.HpyMKF10ORF520P (98% identity) | ATTAAT | M.Hpyfe125ORF2705P |
2710 | lipopolysaccharide heptosyltransferase family | |||
2715 | translational GTPase TypA | |||
2720 | M | M.Hpyfe13ORF4960P (99% identity) | ACNGT | M.Hpyfe125ORF2720P |
2725 | R | Hpyfe7ORF4785P (100% identity) | ACNGT | Hpyfe125ORF2720P |
2730 | catalase | |||
2810 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2815 | M | M.HpyTW22IX (100% identity) | GTAC | M.Hpyfe125ORF2815P |
2820 | R | Hpyfe7ORF4690P (100% identity) | GTAC | Hpyfe125ORF2815P |
2825 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
3665 | outer membrane protein | |||
3670 | RM | Hpyfe113ORF6620P (93% identity) | Hpyfe125ORF3670P | |
3675 | (Fe-S)-binding protein | |||
4500 | type I restriction-modification system subunit | |||
4505 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.Hpyfe125ORF4505P |
4510 | R | HpyK042ORF2510P (99% identity) | GGCC | Hpyfe125ORF4505P |
4515 | phosphatase PAP2 family protein | |||
4775 | flagellar hook protein FlgE | |||
4780 | R | HpyUM111ORF7085P (93% identity) | GTNNAC | Hpyfe125ORF4785P |
4785 | M | M.Hpyfe78ORF4310P (98% identity) | GTNNAC | M.Hpyfe125ORF4785P |
4790 | ATP-dependent helicase | |||
5435 | acetyl-CoA carboxylase biotin carboxylase | |||
5440 | M | M.Hpyfe28ORF2045P (99% identity) | TCNNGA | M.Hpyfe125ORF5440P |
5445 | R | HpyISR3XIIIP (89% identity) | TCNNGA | Hpyfe125ORF5440P |
5450 | Laminin subunit alpha-2 precursor | |||
5625 | 144 aa hypothetical protein | |||
5630 | M | M.HpyJ015XII (99% identity) | GCGC | M.Hpyfe125ORF5630P |
5635 | flagellar biosynthesis anti-sigma factor FlgM | |||
6080 | HAD family hydrolase | |||
6085 | M | M.HpyL029I (98% identity) | CATG | M.Hpyfe125ORF6085P |
6090 | R | HpyK043IP (95% identity) | CATG | Hpyfe125ORF6085P |
6095 | serine O-acetyltransferase | |||
6775 | S41 family peptidase | |||
6780 | RM | Hpyfe7ORF6835P (94% identity) | Hpyfe125ORF6780P | |
6785 | carboxylating nicotinate-nucleotide | |||
6840 | site-specific DNA-methyltransferase | |||
6845 | R | Hpyfe7ORF6905P (100% identity) | GATATC | Hpyfe125ORF6850P |
6850 | M | M.Hpyfe7ORF6905P (100% identity) | GATATC | M.Hpyfe125ORF6850P |
6855 | site-specific DNA-methyltransferase | |||
7325 | 107 aa hypothetical protein | |||
7330 | R | Hpyfe7ORF7395P (100% identity) | TGCA | Hpyfe125ORF7335P |
7335 | M | M.Hpyfe7ORF7395P (100% identity) | TGCA | M.Hpyfe125ORF7335P |
7340 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyK117ORF7275P (97% identity) | M.Hpyfe125ORF40P | |
45 | R | Hpyfe102ORF40P (98% identity) | Hpyfe125ORF40P | |
50 | class I SAM-dependent DNA methyltransferase | |||
600 | biotin synthase | |||
605 | R | Hpyfe88ORF655P (96% identity) | Hpyfe125ORF610P | |
610 | M | M.HpyID5ORF6695P (97% identity) | M.Hpyfe125ORF610P | |
615 | DNA/RNA non-specific endonuclease | |||
6835 | copper response regulator transcription factor | |||
??? | M | M.Hpyfe13ORF7175P (97% identity) | M.Hpyfe125ORF6840P | |
6845 | EcoRV family type II restriction endonuclease | |||
6850 | Dam family site-specific | |||
6855 | site-specific DNA-methyltransferase | |||
6860 | R | Hpyfe62ORF6920P (95% identity) | Hpyfe125ORF6840P | |
6865 | rod shape-determining protein MreC | |||
6850 | Dam family site-specific | |||
??? | M | M.Hpyfe125ORF6840P (57% identity) | M.Hpyfe125ORFAP | |
6860 | DEAD/DEAH box helicase family protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2855 | type I glutamate--ammonia ligase | |||
2860 | R | Hpyfe13GmrSD2P (95% identity) | Hpyfe125GmrSD2P | |
2865 | 50S ribosomal protein L9 | |||
3435 | sel1 repeat family protein | |||
3440 | R | Hpyfe7GmrSD2P (99% identity) | Hpyfe125GmrSDP | |
3445 | NAD(P)H-dependent oxidoreductase |