Escherichia coli EC12 |
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Putative Escherichia coli EC12 RM systems
Ref: Ruan,Z. unpublished
REBASE ref # 31265
| Sequence length: | GenBank #: | |
| Chromosome: | 4,982,993 bp | CP060933 |
| plasmid pEC12-3: | 91,360 bp | CP060935 |
REBASE acronym: EcoC12
Org_num: 56785
All begin H9199_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5290 | transposase | |||
| 5295 | R | EcoEC18ORF5320P (100% identity) | TGANNNNNNCTTC | EcoC12ORF5300P |
| 5300 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoC12ORF5300P |
| 5305 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoC12ORF5300P |
| 5310 | AAA family ATPase | |||
| 21720 | restriction endonuclease | |||
| 21725 | M | M.EmaC12ORF11130P (100% identity) | M.EcoC12ORF21725P | |
| 21730 | S | S.EcosEC21ORF19195P (89% identity) | S1.EcoC12ORF21725P | |
| 21735 | IS1 family transposase | |||
| ??? | major facilitator superfamily protein | |||
| 21740 | R | EcosEC21ORF19195P (100% identity) | EcoC12ORF21725P | |
| 21745 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2875 | cell division protein DamX | |||
| 2880 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC12DamP |
| 2885 | ribulose-phosphate 3-epimerase | |||
| 3405 | DUF2556 family protein | |||
| 3410 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC12ORF3410P |
| 3415 | DNA-binding transcriptional regulator Fis | |||
| 4440 | DEAD/DEAH box helicase | |||
| 4445 | RM | SflLIN17ORF3140P (100% identity) | EcoC12ORF4445P | |
| 4450 | transposase | |||
| 10820 | HD domain-containing protein | |||
| 10825 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoC12DcmP |
| 10830 | V | V.SflN107DcmP (100% identity) | V.EcoC12DcmP | |
| 10835 | drug/metabolite exporter YedA | |||
| 13950 | DUF1367 family protein | |||
| 13955 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoC12ORF13960P |
| 13960 | M | M.EcosEC21ORF11865P (100% identity) | M.EcoC12ORF13960P | |
| 13965 | DUF977 family protein | |||
| 22050 | McrC family protein | |||
| 22055 | R | EcosEC21ORF19520P (100% identity) | GGTCTC | EcoC12ORF22060P |
| 22060 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC12ORF22060P |
| 22065 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoC12ORF22060P |
| 22070 | IS21-like element ISEc12 family transposase | |||
| plasmid pEC12-3 | ||||
| 25415 | tellurite/colicin resistance protein | |||
| 25430 | M | M.EcoEC18ORF25265P (100% identity) | M.EcoC12ORF25430P | |
| 25435 | IS21-like element IS100 family transposase | |||
| 25440 | AAA family ATPase | |||
| 25445 | M | M.SspS13ORF50P (33% identity) | M.EcoC12ORF25445P | |
| 25450 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21715 | BrnT family toxin | |||
| 21720 | R | EcosEC21MrrP (100% identity) | EcoC12MrrP | |
| 21725 | type I restriction-modification system subunit | |||
| 22040 | glycosyltransferase family 2 protein | |||
| 22045 | R | EcosS3McrBP (100% identity) | EcoC12McrBP | |
| 22050 | R | EcosS9McrCP (100% identity) | EcoC12McrCP | |
| 22055 | Alw26I/Eco31I/Esp3I family type II restriction | |||