Escherichia coli EC15 |
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Putative Escherichia coli EC15 RM systems
Ref: Ruan,Z. unpublished
REBASE ref # 31265
| Sequence length: | GenBank #: | |
| Chromosome: | 4,956,833 bp | CP060919 |
| plasmid pEC15-3: | 91,360 bp | CP060921 |
REBASE acronym: EcoC15
Org_num: 56788
All begin H9202_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5310 | transposase | |||
| 5315 | R | EcoEC18ORF5320P (100% identity) | TGANNNNNNCTTC | EcoC15ORF5320P |
| 5320 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoC15ORF5320P |
| 5325 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoC15ORF5320P |
| 5330 | AAA family ATPase | |||
| 21550 | restriction endonuclease | |||
| 21555 | M | M.EmaC12ORF11130P (100% identity) | M.EcoC15ORF21555P | |
| ??? | S | S1.EcoEC18ORF21560P (100% identity) | S1.EcoC15ORF21555P | |
| 21560 | IS1 family transposase | |||
| ??? | major facilitator superfamily protein | |||
| 21565 | R | EcosEC21ORF19195P (100% identity) | EcoC15ORF21555P | |
| 21570 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2880 | cell division protein DamX | |||
| 2885 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC15DamP |
| 2890 | ribulose-phosphate 3-epimerase | |||
| 3410 | DUF2556 family protein | |||
| 3415 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC15ORF3415P |
| 3420 | DNA-binding transcriptional regulator Fis | |||
| 10845 | HD domain-containing protein | |||
| 10850 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoC15DcmP |
| 10855 | V | V.SflN107DcmP (100% identity) | V.EcoC15DcmP | |
| 10860 | drug/metabolite exporter YedA | |||
| 13975 | DUF1367 family protein | |||
| 13980 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoC15ORF13985P |
| 13985 | M | M.EcosEC21ORF11865P (100% identity) | M.EcoC15ORF13985P | |
| 13990 | DUF977 family protein | |||
| 21875 | McrC family protein | |||
| 21880 | R | EcosEC21ORF19520P (100% identity) | GGTCTC | EcoC15ORF21885P |
| 21885 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC15ORF21885P |
| 21890 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoC15ORF21885P |
| 21895 | IS21-like element ISEc12 family transposase | |||
| plasmid pEC15-3 | ||||
| 25250 | tellurite/colicin resistance protein | |||
| 25265 | M | M.EcoEC18ORF25265P (100% identity) | M.EcoC15ORF25265P | |
| 25270 | IS21-like element IS100 family transposase | |||
| 25275 | AAA family ATPase | |||
| 25280 | M | M.SspS13ORF50P (33% identity) | M.EcoC15ORF25280P | |
| 25285 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21545 | BrnT family toxin | |||
| 21550 | R | EcosEC21MrrP (100% identity) | EcoC15MrrP | |
| 21555 | type I restriction-modification system subunit | |||
| 21865 | glycosyltransferase family 2 protein | |||
| 21870 | R | EcosS3McrBP (100% identity) | EcoC15McrBP | |
| 21875 | R | EcosS9McrCP (100% identity) | EcoC15McrCP | |
| 21880 | Alw26I/Eco31I/Esp3I family type II restriction | |||