Shigella flexneri STLIN_4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri STLIN_4 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,720,880 bp | CP058786 |
| plasmid unnamed1: | 92,052 bp | CP058787 |
| plasmid unnamed2: | 85,618 bp | CP058788 |
REBASE acronym: SflLIN4
Org_num: 56709
All begin HZT07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3875 | transposase | |||
| 3880 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SflLIN4ORF3885P |
| 3885 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SflLIN4ORF3885P |
| 3890 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflLIN4ORF3885P |
| 3895 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflLIN4ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 9180 | phosphohydrolase | |||
| 9185 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflLIN4DcmP |
| 9190 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflLIN4DcmP |
| 9195 | drug/metabolite exporter YedA | |||
| 11140 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.SflLIN4ORF11145P | |
| 11150 | IS66-like element ISEc22 family transposase | |||
| 15070 | replication endonuclease | |||
| 15075 | M | M.SflN92ORF14970P (100% identity) | GATC | M.SflLIN4ORF15075P |
| 15080 | TraR/DksA family transcriptional regulator | |||
| 19620 | HNH endonuclease | |||
| 19625 | R | SflSTLE4ORF19250P (100% identity) | SflLIN4ORF19625P | |
| 19630 | McrC family protein | |||
| plasmid unnamed1 | ||||
| 23040 | glutamine--tRNA ligase | |||
| 23045 | M | M.SflLIN12ORF23470P (100% identity) | M.SflLIN4ORF23045P | |
| 23050 | 216 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 23590 | 103 aa hypothetical protein | |||
| 23595 | M | M.SflLIN11ORF23735P (100% identity) | M.SflLIN4ORF23595P | |
| 23600 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19625 | HNH endonuclease | |||
| 19630 | R | SflSTLE4McrCP (100% identity) | SflLIN4McrCP | |
| 19635 | R | SflSTLE4McrBP (100% identity) | SflLIN4McrBP | |
| 19640 | DUF4942 domain-containing protein | |||