Shigella flexneri STLIN_17 |
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Putative Shigella flexneri STLIN_17 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,626,646 bp
GenBank #: CP058780
REBASE acronym: SflLIN17
Org_num: 56708
All begin HZT03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9025 | 388 aa hypothetical protein | |||
| 9030 | M | M.EcoMB56ORF8945P (100% identity) | M.SflLIN17ORF9030P | |
| 9035 | S | S.EcosS142ORF17720P (99% identity) | S.SflLIN17ORF9030P | |
| 9040 | YecA family protein | |||
| 9045 | cold shock domain-containing protein | |||
| 9050 | R | EcoG5ORF9385P (99% identity) | SflLIN17ORF9030P | |
| 9055 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2135 | DUF2556 family protein | |||
| 2140 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.SflLIN17ORF2140P |
| 2145 | DNA-binding transcriptional regulator Fis | |||
| 3135 | DEAD/DEAH box helicase | |||
| 3140 | RM | Sensp14152ORF3460P (100% identity) | SflLIN17ORF3140P | |
| 3145 | transposase | |||
| 8705 | phosphohydrolase | |||
| 8710 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflLIN17DcmP |
| 8715 | V | V.SsoSE61DcmP (99% identity) | V.SflLIN17DcmP | |
| 8720 | drug/metabolite exporter YedA | |||
| 14470 | replication endonuclease | |||
| 14475 | M | M.Sen96147ORF7010P (100% identity) | GATC | M.SflLIN17ORF14475P |
| 14480 | TraR/DksA family transcriptional regulator | |||
| 17400 | phage holin, lambda family | |||
| 17405 | M | M.SensTJX21ORF13615P (100% identity) | M.SflLIN17ORF17405P | |
| 17410 | 92 aa hypothetical protein | |||
| 17435 | LexA family transcriptional regulator | |||
| 17440 | M | M.Sfl670ORF22500P (100% identity) | GATC | M.SflLIN17ORF17440P |
| 17445 | PerC family transcriptional regulator | |||
| 20565 | phage lysis protein EssD | |||
| 20570 | M | M.Sso63633ORF22290P (100% identity) | M.SflLIN17ORF20570P | |
| 20575 | TrmB family transcriptional regulator | |||
| 20610 | LexA family transcriptional regulator | |||
| 20615 | M | M.SflFF3ORF21935P (100% identity) | GATC | M.SflLIN17ORF20615P |
| 20620 | PerC family transcriptional regulator | |||