Escherichia coli STLIN_13 |
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Putative Escherichia coli STLIN_13 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,872,342 bp | CP058748 |
| plasmid unnamed1: | 121,453 bp | CP058749 |
| plasmid unnamed2: | 95,942 bp | CP058750 |
| plasmid unnamed3: | 61,568 bp | CP058751 |
REBASE acronym: EcoLIN13
Org_num: 56640
All begin HZS99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19905 | N-6 DNA methylase | |||
| 19910 | R | EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | EcoLIN13ORF19920P |
| 19915 | S | S.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | S.EcoLIN13ORF19920P |
| 19920 | M | M2.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | M2.EcoLIN13ORF19920P |
| 19925 | M | M1.EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | M1.EcoLIN13ORF19920P |
| 19930 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2060 | cell division protein DamX | |||
| 2065 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLIN13DamP |
| 2070 | ribulose-phosphate 3-epimerase | |||
| 2590 | DUF2556 family protein | |||
| 2595 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.EcoLIN13ORF2595P |
| 2600 | DNA-binding transcriptional regulator Fis | |||
| 13440 | drug/metabolite exporter YedA | |||
| 13445 | V | V.EcoWW2DcmP (100% identity) | V.EcoLIN13DcmP | |
| 13450 | M | M.EcoWW2DcmP (100% identity) | CCWGG | M.EcoLIN13DcmP |
| 13455 | phosphohydrolase | |||
| 16700 | class II holin family protein | |||
| 16705 | M | M.EcoWW2ORF16975P (100% identity) | M.EcoLIN13ORF16705P | |
| 16710 | TrmB family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 23745 | 102 aa hypothetical protein | |||
| 23750 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoLIN13ORF23750P | |
| 23755 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24285 | recombination-associated protein RdgC | |||
| 24290 | M | M.EcoG2M7ORF24425P (100% identity) | M.EcoLIN13ORF24290P | |
| 24305 | SPFH/Band 7/PHB domain protein | |||
| plasmid unnamed3 | ||||
| 24555 | IS6-like element IS26 family transposase | |||
| 24560 | R | YpsR2ORFAP (55% identity) | CCWGG | EcoLIN13ORF24565P |
| 24565 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoLIN13ORF24565P |
| 24570 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19945 | 125 aa hypothetical protein | |||
| 19950 | R | EcoWW2ORF20220P (100% identity) | EcoLIN13ORF19950P | |
| 19960 | NADPH-dependent aldehyde reductase Ahr | |||