Shigella flexneri STLIN_12 |
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Putative Shigella flexneri STLIN_12 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,743,960 bp | CP058776 |
| plasmid unnamed2: | 85,611 bp | CP058778 |
REBASE acronym: SflLIN12
Org_num: 56707
All begin HZS98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3885 | transposase | |||
| 3890 | R | SspZ54ORF5015P (99% identity) | TGANNNNNNCTTC | SflLIN12ORF3895P |
| 3895 | M | M.SspZ54ORF5015P (99% identity) | TGANNNNNNCTTC | M.SflLIN12ORF3895P |
| 3900 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflLIN12ORF3895P |
| 3905 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1625 | cell division protein DamX | |||
| 1630 | M | M.EcoSCU479DamP (99% identity) | GATC | M.SflLIN12DamP |
| 1635 | ribulose-phosphate 3-epimerase | |||
| 2255 | DUF2556 family protein | |||
| 2260 | M | M.EcoDEC6CORF3920P (100% identity) | ATGCAT | M.SflLIN12ORF2260P |
| 2265 | DNA-binding transcriptional regulator Fis | |||
| 9215 | phosphohydrolase | |||
| 9220 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflLIN12DcmP |
| 9225 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflLIN12DcmP |
| 9230 | drug/metabolite exporter YedA | |||
| 11190 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.SflLIN12ORF11195P | |
| 11200 | IS66-like element ISEc22 family transposase | |||
| 15280 | replication endonuclease | |||
| 15285 | M | M.SflN92ORF14970P (100% identity) | GATC | M.SflLIN12ORF15285P |
| 15290 | TraR/DksA family transcriptional regulator | |||
| 19870 | HNH endonuclease | |||
| 19875 | R | SflSTLE4ORF19250P (98% identity) | SflLIN12ORF19875P | |
| 19880 | McrC family protein | |||
| plasmid unnamed2 | ||||
| 23810 | 103 aa hypothetical protein | |||
| 23815 | M | M.SflLIN4ORF23595P (99% identity) | M.SflLIN12ORF23815P | |
| 23820 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19875 | HNH endonuclease | |||
| 19880 | R | SflSTLE4McrCP (99% identity) | SflLIN12McrCP | |
| 19885 | R | SflSTLE4McrBP (99% identity) | SflLIN12McrBP | |
| 19890 | DUF4942 domain-containing protein | |||