Shigella flexneri STLIN_11 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri STLIN_11 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,872,039 bp | CP058771 |
| plasmid unnamed1: | 121,463 bp | CP058772 |
| plasmid unnamed2: | 95,902 bp | CP058773 |
| plasmid unnamed3: | 61,566 bp | CP058774 |
REBASE acronym: SflLIN11
Org_num: 56706
All begin HZS97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19965 | N-6 DNA methylase | |||
| 19970 | R | EcoWW2ORF20190P (99% identity) | CCCNNNNNGTG | SflLIN11ORF19980P |
| 19975 | S | S.EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | S.SflLIN11ORF19980P |
| 19980 | M | M2.EcoSTEFF1ORF20570P (100% identity) | CCCNNNNNGTG | M2.SflLIN11ORF19980P |
| 19985 | M | M1.EcoWW2ORF20190P (99% identity) | CCCNNNNNGTG | M1.SflLIN11ORF19980P |
| 19990 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflLIN11ORF2610P |
| 2615 | DNA-binding transcriptional regulator Fis | |||
| 13465 | drug/metabolite exporter YedA | |||
| 13470 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflLIN11DcmP |
| 13475 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflLIN11DcmP |
| 13480 | phosphohydrolase | |||
| 16765 | 63 aa hypothetical protein | |||
| 16770 | M | M.EcoWW2ORF16975P (99% identity) | M.SflLIN11ORF16770P | |
| 16775 | TrmB family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 23730 | 103 aa hypothetical protein | |||
| 23735 | M | M.SflLIN4ORF23595P (100% identity) | M.SflLIN11ORF23735P | |
| 23740 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24210 | SPFH/Band 7/PHB domain protein | |||
| 24225 | M | M.EcoLIN13ORF24290P (99% identity) | M.SflLIN11ORF24225P | |
| 24230 | recombination-associated protein RdgC | |||
| plasmid unnamed3 | ||||
| 24660 | IS1 family transposase | |||
| 24665 | M | M.Sens679ORF23190P (100% identity) | CCWGG | M.SflLIN11ORF24665P |
| 24670 | R | YpsR2ORFAP (55% identity) | CCWGG | SflLIN11ORF24665P |
| 24675 | IS6-like element IS26 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7165 | recombination protein NinB | |||
| 7170 | M | M.Ecostr10ORF23295P (100% identity) | GATC | M.SflLIN11ORF7170P |
| 7175 | protein ninD | |||