Shigella flexneri STLEFF_35 |
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Putative Shigella flexneri STLEFF_35 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,721,929 bp
GenBank #: CP058846
REBASE acronym: SflFF35
Org_num: 56703
All begin HZT27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18275 | GTPase family protein | |||
| 18280 | M | M.EcoCP131ORF13015P (99% identity) | M.SflFF35ORF18280P | |
| 18285 | S | S1.Eco6E9ORF1020P (68% identity) | S.SflFF35ORF18280P | |
| 18290 | R | SflFF34ORF9300P (99% identity) | SflFF35ORF18280P | |
| 18295 | IS5-like element ISKpn26 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15 | DUF3850 domain-containing protein | |||
| 20 | M | M.EcoUS31ORF20P (100% identity) | GGCC | M.SflFF35ORF20P |
| 25 | 330 aa hypothetical protein | |||
| 12295 | drug/metabolite exporter YedA | |||
| 12300 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflFF35DcmP |
| 12305 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.SflFF35DcmP |
| 12310 | phosphohydrolase | |||
| 12410 | DUF4406 domain-containing protein | |||
| 12415 | M | M.Eco36C07ORF8880P (82% identity) | M.SflFF35ORF12415P | |
| 12420 | 79 aa hypothetical protein | |||
| 12895 | NinE family protein | |||
| 12900 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.SflFF35ORF12900P |
| 12905 | HNH endonuclease | |||
| 15965 | 121 aa hypothetical protein | |||
| 15970 | R | Sso8033ORF3755P (100% identity) | CCWGG | SflFF35ORF15975P |
| 15975 | M | M.SflSTLE1ORF5615P (100% identity) | M.SflFF35ORF15975P | |
| 15980 | 257 aa hypothetical protein | |||
| 16045 | LexA family transcriptional regulator | |||
| 16050 | M | M.Sen18578ORF17055P (100% identity) | GATC | M.SflFF35ORF16050P |
| 16055 | PerC family transcriptional regulator | |||
| 19350 | DNA-binding transcriptional regulator Fis | |||
| 19355 | M | M.Ssp28760ORF20045P (99% identity) | ATGCAT | M.SflFF35ORF19355P |
| 19360 | DUF2556 family protein | |||
| 19930 | ribulose-phosphate 3-epimerase | |||
| 19935 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF35DamP |
| 19940 | cell division protein DamX | |||