Shigella flexneri STLEFF_34 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri STLEFF_34 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,782,639 bp | CP058839 |
| plasmid unnamed1: | 98,962 bp | CP058840 |
REBASE acronym: SflFF34
Org_num: 56702
All begin HZT26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9285 | IS5 family transposase | |||
| 9290 | R | SflFF27ORF9310P (100% identity) | SflFF34ORF9300P | |
| 9295 | S | S.SflN97ORF14060P (100% identity) | S.SflFF34ORF9300P | |
| 9300 | M | M.SflFF27ORF9310P (100% identity) | M.SflFF34ORF9300P | |
| 9305 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12355 | DNA-binding transcriptional regulator Fis | |||
| 12360 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflFF34ORF12360P |
| 12365 | DUF2556 family protein | |||
| 12980 | ribulose-phosphate 3-epimerase | |||
| 12985 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF34DamP |
| 12990 | cell division protein DamX | |||
| 17790 | McrC family protein | |||
| 17795 | R | SflSTLE4ORF19250P (100% identity) | SflFF34ORF17795P | |
| 17800 | HNH endonuclease | |||
| 18165 | PerC family transcriptional regulator | |||
| 18170 | M | M.SphSfIIORF43P (100% identity) | GATC | M.SflFF34ORF18170P |
| 18175 | LexA family transcriptional regulator | |||
| 18200 | 92 aa hypothetical protein | |||
| 18205 | M | M.SflFF27ORF18220P (100% identity) | M.SflFF34ORF18205P | |
| 18210 | phage holin, lambda family | |||
| 22625 | TraR/DksA family transcriptional regulator | |||
| 22630 | M | M.SflFF27ORF22650P (100% identity) | GATC | M.SflFF34ORF22630P |
| 22635 | replication endonuclease | |||
| plasmid unnamed1 | ||||
| 23355 | IS1 family transposase | |||
| 23360 | R | SflFF67ORF22305P (100% identity) | GCWGC | SflFF34ORF23360P |
| 23365 | IS1 family transposase | |||
| 23420 | 103 aa hypothetical protein | |||
| 23425 | M | M.SflFF27ORF23440P (100% identity) | M.SflFF34ORF23425P | |
| 23430 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17780 | DUF4942 domain-containing protein | |||
| 17785 | R | SflSTLE4McrBP (100% identity) | SflFF34McrBP | |
| 17790 | R | SflSTLE4McrCP (100% identity) | SflFF34McrCP | |
| 17795 | HNH endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8570 | PerC family transcriptional regulator | |||
| 8575 | M | M.SflFF27ORF8585P (100% identity) | GATC | M.SflFF34ORF8575P |
| 8580 | serine/threonine protein phosphatase | |||