Shigella flexneri STLEFF_27 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri STLEFF_27 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,783,845 bp | CP058833 |
| plasmid unnamed1: | 98,962 bp | CP058834 |
| plasmid unnamed3: | 6,268 bp | CP058836 |
REBASE acronym: SflFF27
Org_num: 56700
All begin HZT22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9295 | IS5 family transposase | |||
| 9300 | R | SflFF34ORF9300P (100% identity) | SflFF27ORF9310P | |
| 9305 | S | S.SflN97ORF14060P (100% identity) | S.SflFF27ORF9310P | |
| 9310 | M | M.SflFF34ORF9300P (100% identity) | M.SflFF27ORF9310P | |
| 9315 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12360 | DNA-binding transcriptional regulator Fis | |||
| 12365 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflFF27ORF12365P |
| 12370 | DUF2556 family protein | |||
| 12990 | ribulose-phosphate 3-epimerase | |||
| 12995 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF27DamP |
| 13000 | cell division protein DamX | |||
| 17805 | McrC family protein | |||
| 17810 | R | SflSTLE4ORF19250P (100% identity) | SflFF27ORF17810P | |
| 17815 | HNH endonuclease | |||
| 18180 | PerC family transcriptional regulator | |||
| 18185 | M | M.SphSfIIORF43P (100% identity) | GATC | M.SflFF27ORF18185P |
| 18190 | LexA family transcriptional regulator | |||
| 18215 | 92 aa hypothetical protein | |||
| 18220 | M | M.SflFF34ORF18205P (100% identity) | M.SflFF27ORF18220P | |
| 18225 | phage holin, lambda family | |||
| 22645 | TraR/DksA family transcriptional regulator | |||
| 22650 | M | M.SflFF34ORF22630P (100% identity) | GATC | M.SflFF27ORF22650P |
| 22655 | replication endonuclease | |||
| plasmid unnamed1 | ||||
| 23370 | IS1 family transposase | |||
| 23375 | R | SflFF67ORF22305P (100% identity) | GCWGC | SflFF27ORF23375P |
| 23380 | IS1 family transposase | |||
| 23435 | 103 aa hypothetical protein | |||
| 23440 | M | M.SflFF34ORF23425P (100% identity) | M.SflFF27ORF23440P | |
| 23445 | 73 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 24210 | Rop family plasmid primer RNA-binding protein | |||
| 24215 | R | SflFF34ORF24420P (100% identity) | CCNGG | SflFF27ORF24220P |
| 24220 | M | M.SflFF34ORF24420P (100% identity) | CCNGG | M.SflFF27ORF24220P |
| 24225 | 147 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17795 | DUF4942 domain-containing protein | |||
| 17800 | R | SflSTLE4McrBP (100% identity) | SflFF27McrBP | |
| 17805 | R | SflSTLE4McrCP (100% identity) | SflFF27McrCP | |
| 17810 | HNH endonuclease | |||