Shigella flexneri SWHIN_110 |
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Putative Shigella flexneri SWHIN_110 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,614,010 bp
GenBank #: CP055092
REBASE acronym: SflN110
Org_num: 55457
All begin HUZ87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19040 | DUF4942 domain-containing protein | |||
| 19045 | M | M.SflFF87ORF19760P (100% identity) | CCANNNNNNNNTGAA | M.SflN110ORF19045P |
| ??? | S | S.SflFF87ORF19760P (100% identity) | CCANNNNNNNNTGAA | S.SflN110ORF19045P |
| 19060 | R | SflFF87ORF19760P (100% identity) | CCANNNNNNNNTGAA | SflN110ORF19045P |
| 19065 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1640 | cell division protein DamX | |||
| 1645 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflN110DamP |
| 1650 | ribulose-phosphate 3-epimerase | |||
| 2265 | DUF2556 family protein | |||
| 2270 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflN110ORF2270P |
| 2275 | DNA-binding transcriptional regulator Fis | |||
| 8830 | phosphohydrolase | |||
| 8835 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.SflN110DcmP |
| 8840 | V | V.SflSTLE1DcmP (100% identity) | V.SflN110DcmP | |
| 8845 | drug/metabolite exporter YedA | |||
| 12330 | DUF3927 family protein | |||
| 12345 | M | M.SsoCS14ORF10750P (100% identity) | A | M.SflN110ORF12345P |
| 12350 | 79 aa hypothetical protein | |||
| 19020 | HNH endonuclease | |||
| 19025 | R | SflSTLE4ORF19250P (100% identity) | SflN110ORF19025P | |
| 19030 | McrC family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19025 | HNH endonuclease | |||
| 19030 | R | SflSTLE4McrCP (100% identity) | SflN110McrCP | |
| 19035 | R | SflSTLE4McrBP (100% identity) | SflN110McrBP | |
| 19040 | DUF4942 domain-containing protein | |||