Shigella flexneri SWHIN_116 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri SWHIN_116 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,680,646 bp | CP055075 |
| plasmid unnamed1: | 125,787 bp | CP055076 |
REBASE acronym: SflN116
Org_num: 55458
All begin HUZ90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3930 | transposase | |||
| 3935 | R | EcoSC3IIP (99% identity) | CAAYNNNNNCTGC | SflN116ORF3940P |
| 3940 | M | M.EcoSC3II (100% identity) | CAAYNNNNNCTGC | M.SflN116ORF3940P |
| 3945 | S | S.EcoSC3II (100% identity) | CAAYNNNNNCTGC | S.SflN116ORF3940P |
| 3950 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1635 | cell division protein DamX | |||
| 1640 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflN116DamP |
| 1645 | ribulose-phosphate 3-epimerase | |||
| 2260 | DUF2556 family protein | |||
| 2265 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.SflN116ORF2265P |
| 2270 | DNA-binding transcriptional regulator Fis | |||
| 8650 | HNH endonuclease | |||
| 8655 | M | M.SflN97ORF15810P (100% identity) | GATC | M.SflN116ORF8655P |
| 8660 | NinE family protein | |||
| 9165 | phosphohydrolase | |||
| 9170 | M | M.Ecos179DcmP (100% identity) | CCWGG | M.SflN116DcmP |
| 9175 | V | V.Ecos179DcmP (100% identity) | CCWGG | V.SflN116DcmP |
| 9180 | drug/metabolite exporter YedA | |||
| 17730 | phage lysis protein EssD | |||
| 17735 | M | M.EcoP169ORF19495P (100% identity) | M.SflN116ORF17735P | |
| 17740 | 67 aa hypothetical protein | |||
| 17745 | AAA family ATPase | |||
| 17750 | M | M.EcosEC4ORF18100P (100% identity) | M.SflN116ORF17750P | |
| 17755 | antitermination protein | |||
| 17775 | LexA family transcriptional regulator | |||
| 17780 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SflN116ORF17780P |
| 17785 | PerC family transcriptional regulator | |||
| 19470 | HNH endonuclease | |||
| 19475 | R | Ecoi648ORF4145P (100% identity) | SflN116ORF19475P | |
| 19480 | 100 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23080 | conjugal transfer mating pair stabilization | |||
| 23085 | M | M.UbapRSB107ORFAP (66% identity) | M.SflN116ORF23085P | |
| 23090 | 102 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19480 | 100 aa hypothetical protein | |||
| 19485 | R | Ecos32ORF17215P (100% identity) | GAACC | SflN116ORF19490P |
| 19490 | M | M.Ecos32ORF17215P (100% identity) | GAACC | M.SflN116ORF19490P |
| 19495 | DEAD/DEAH box helicase family protein | |||