Shigella dysenteriae SWHEFF_49 |
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Putative Shigella dysenteriae SWHEFF_49 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 5,075,418 bp | CP055055 |
| plasmid unnamed1: | 117,256 bp | CP055056 |
REBASE acronym: SdyFF49
Org_num: 55436
All begin HUZ68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2565 | endoribonuclease SymE | |||
| 2570 | R | SdyFF51ORF2580P (100% identity) | SdyFF49ORF2580P | |
| 2575 | S | S.SdyFF51ORF2580P (100% identity) | S.SdyFF49ORF2580P | |
| 2580 | M | M.SdyFF51ORF2580P (100% identity) | M.SdyFF49ORF2580P | |
| 2585 | restriction endonuclease | |||
| 19245 | GTPase family protein | |||
| 19250 | M | M.SdyFF51ORF19255P (100% identity) | AAAYNNNNNCTC | M.SdyFF49ORF19250P |
| 19255 | S | S.SdyFF51ORF19255P (100% identity) | AAAYNNNNNCTC | S.SdyFF49ORF19250P |
| 19260 | R | SdyFF51ORF19255P (100% identity) | AAAYNNNNNCTC | SdyFF49ORF19250P |
| 19265 | IS5-like element ISKpn26 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1000 | helix-turn-helix domain-containing protein | |||
| 1005 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SdyFF49ORF1005P |
| 1010 | LexA family transcriptional regulator | |||
| 1035 | 67 aa hypothetical protein | |||
| 1040 | M | M.SflLIN17ORF17405P (100% identity) | M.SdyFF49ORF1040P | |
| 1045 | phage holin, lambda family | |||
| 2320 | 59 aa hypothetical protein | |||
| 2325 | R | SdyFF51ORF2325P (100% identity) | SdyFF49ORF2325P | |
| 2330 | N-acetylneuraminic acid mutarotase | |||
| 7315 | recombination protein NinB | |||
| 7320 | M | M.Sfl9783ORF5079P (100% identity) | M.SdyFF49ORF7320P | |
| 7325 | NinE family protein | |||
| 13640 | drug/metabolite exporter YedA | |||
| 13645 | V | V.SdySWHE2DcmP (100% identity) | V.SdyFF49DcmP | |
| 13650 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.SdyFF49DcmP |
| 13655 | phosphohydrolase | |||
| 20380 | DNA-binding transcriptional regulator Fis | |||
| 20385 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.SdyFF49ORF20385P |
| 20390 | DUF2556 family protein | |||
| 20945 | ribulose-phosphate 3-epimerase | |||
| 20950 | M | M.UbaC1152DamP (100% identity) | GATC | M.SdyFF49DamP |
| 20955 | cell division protein DamX | |||
| plasmid unnamed1 | ||||
| 24510 | 73 aa hypothetical protein | |||
| 24515 | M | M.SdyFF51ORF24515P (100% identity) | M.SdyFF49ORF24515P | |
| 24520 | 101 aa hypothetical protein | |||