Shigella flexneri STIN_80 |
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Putative Shigella flexneri STIN_80 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,758,327 bp
GenBank #: CP055000
REBASE acronym: SflFF80
Org_num: 55446
All begin HUZ55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4070 | DNA-binding protein | |||
| 4075 | M | M.EcoEC107ORF17490P (100% identity) | M.SflFF80ORF4075P | |
| 4080 | S | S1.Eru07AORF9865P (62% identity) | S.SflFF80ORF4075P | |
| 4085 | R | Eco45C22ORF13020P (100% identity) | SflFF80ORF4075P | |
| 4090 | lactate utilization protein C | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1670 | cell division protein DamX | |||
| 1675 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF80DamP |
| 1680 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.SflFF80ORF2310P |
| 2315 | tyrosine-type recombinase/integrase | |||
| 9000 | phosphohydrolase | |||
| 9005 | M | M.Ecoi012DcmP (99% identity) | CCWGG | M.SflFF80DcmP |
| 9010 | V | V.Ecoi012DcmP (100% identity) | V.SflFF80DcmP | |
| 9015 | drug/metabolite exporter YedA | |||
| 13020 | DinI family protein | |||
| 13025 | M | M.EcoW102ORF13930P (99% identity) | M.SflFF80ORF13025P | |
| 13030 | 85 aa hypothetical protein | |||
| 18300 | LexA family transcriptional regulator | |||
| 18305 | M | M.Ecoi012ORF9220P (100% identity) | GATC | M.SflFF80ORF18305P |
| 18310 | PerC family transcriptional regulator | |||
| 20990 | IS3 family transposase | |||
| 20995 | R | Sen624ORF21070P (100% identity) | YGGCCR | SflFF80ORF21000P |
| 21000 | M | M.Sen2206ORF21055P (100% identity) | YGGCCR | M.SflFF80ORF21000P |
| 21005 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18095 | 71 aa hypothetical protein | |||
| 18100 | R | EcostT2GmrSDP (100% identity) | SflFF80GmrDP | |
| 18105 | recombinase family protein | |||