Shigella flexneri STIN_92 |
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Putative Shigella flexneri STIN_92 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,813,336 bp | CP054977 |
| plasmid unnamed1: | 199,931 bp | CP054978 |
| plasmid unnamed3: | 124,795 bp | CP054980 |
REBASE acronym: SflN92
Org_num: 55448
All begin HUZ60_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1615 | cell division protein DamX | |||
| 1620 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflN92DamP |
| 1625 | ribulose-phosphate 3-epimerase | |||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflN92ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 9240 | phosphohydrolase | |||
| 9245 | M | M.SflFF87DcmP (100% identity) | CCWGG | M.SflN92DcmP |
| 9250 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflN92DcmP |
| 9255 | drug/metabolite exporter YedA | |||
| 11195 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.SflN92ORF11200P | |
| 11205 | IS66-like element ISEc22 family transposase | |||
| 14965 | replication endonuclease | |||
| 14970 | M | M.SflLIN4ORF15075P (100% identity) | GATC | M.SflN92ORF14970P |
| 14975 | TraR/DksA family transcriptional regulator | |||
| 16715 | 63 aa hypothetical protein | |||
| 16720 | M | M.EcoWW2ORF16975P (99% identity) | M.SflN92ORF16720P | |
| 16725 | TrmB family transcriptional regulator | |||
| 18230 | phage lysis protein EssD | |||
| 18235 | M | M.EcoFF47ORF18370P (99% identity) | M.SflN92ORF18235P | |
| 18240 | 264 aa hypothetical protein | |||
| 20025 | HNH endonuclease | |||
| 20030 | R | SflSTLE4ORF19250P (100% identity) | SflN92ORF20030P | |
| 20035 | McrC family protein | |||
| plasmid unnamed1 | ||||
| 24105 | DNA replication protein DnaC | |||
| 24110 | M | M.KvaKGB1ORF27305P (100% identity) | M.SflN92ORF24110P | |
| 24115 | R | Sen20597ORF9325P (99% identity) | SflN92ORF24110P | |
| 24120 | 82 aa hypothetical protein | |||
| 24185 | 168 aa hypothetical protein | |||
| 24190 | M | M.KpnFF72ORF27555P (100% identity) | M.SflN92ORF24190P | |
| 24195 | 1126 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 25430 | 102 aa hypothetical protein | |||
| 25435 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.SflN92ORF25435P |
| 25440 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20030 | HNH endonuclease | |||
| 20035 | R | SflSTLE4McrCP (100% identity) | SflN92McrCP | |
| 20040 | R | SflSTLE4McrBP (100% identity) | SflN92McrBP | |
| 20045 | DUF4942 domain-containing protein | |||