Shigella flexneri STEFF_3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella flexneri STEFF_3 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,905,256 bp | CP055199 |
| plasmid unnamed1: | 137,403 bp | CP055200 |
| plasmid unnamed2: | 92,910 bp | CP055201 |
REBASE acronym: SflFF3
Org_num: 55445
All begin HUZ39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20370 | 322 aa hypothetical protein | |||
| 20375 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | SflFF3ORF20380P |
| 20380 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.SflFF3ORF20380P |
| 20385 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.SflFF3ORF20380P |
| 20390 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1995 | cell division protein DamX | |||
| 2000 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF3DamP |
| 2005 | ribulose-phosphate 3-epimerase | |||
| 2525 | DUF2556 family protein | |||
| 2530 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflFF3ORF2530P |
| 2535 | DNA-binding transcriptional regulator Fis | |||
| 9740 | HD domain-containing protein | |||
| 9745 | M | M.SflN107DcmP (100% identity) | CCWGG | M.SflFF3DcmP |
| 9750 | V | V.SflN107DcmP (100% identity) | V.SflFF3DcmP | |
| 9755 | drug/metabolite exporter YedA | |||
| 20575 | HNH endonuclease | |||
| 20580 | R | SflN101ORF11875P (100% identity) | SflFF3ORF20580P | |
| 20585 | AAA family ATPase | |||
| 21895 | phage holin, lambda family | |||
| 21900 | M | M.EcoMB19ORF20915P (100% identity) | M.SflFF3ORF20115P | |
| 21905 | 67 aa hypothetical protein | |||
| 21930 | LexA family transcriptional regulator | |||
| 21935 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.SflFF3ORF21935P |
| 21940 | PerC family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 24115 | IS6-like element IS26 family transposase | |||
| 24120 | R | Ssp3CORF24390P (100% identity) | CCWGG | SflFF3ORF24125P |
| 24125 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.SflFF3ORF24125P |
| 24130 | IS1 family transposase | |||
| 24550 | 73 aa hypothetical protein | |||
| 24555 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.SflFF3ORF24555P |
| 24560 | 102 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25135 | tellurite resistance TerB family protein | |||
| 25150 | M | M.EcoDC71ORF23225P (100% identity) | M.SflFF3ORF25150P | |
| 25155 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20390 | endoribonuclease SymE | |||
| ??? | R | SflN101GmrSP (100% identity) | SflFF3GmrSP | |
| 20400 | DUF1127 domain-containing protein | |||
| 20580 | HNH endonuclease | |||
| 20585 | R | SflN101McrBP (100% identity) | SflFF3McrBP | |
| 20590 | R | SflN101McrCP (100% identity) | SflFF3McrCP | |
| 20595 | 129 aa hypothetical protein | |||