Shigella flexneri STEFF_10 |
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Putative Shigella flexneri STEFF_10 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,861,987 bp
GenBank #: CP055194
REBASE acronym: SdyFF10
Org_num: 55438
All begin HUZ40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20070 | IS3-like element IS3 family transposase | |||
| 20075 | M | M.EcoW26ORF3070P (77% identity) | M.SdyFF10ORF20075P | |
| 20080 | S | S.EcoS207ORF10915P (100% identity) | S.SdyFF10ORF20075P | |
| 20085 | R | EcoW26ORF3070P (100% identity) | SdyFF10ORF20075P | |
| 20090 | toxin | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1690 | cell division protein DamX | |||
| 1695 | M | M.UbaC1152DamP (100% identity) | GATC | M.SdyFF10DamP |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SdyFF10ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 5490 | TraR/DksA family transcriptional regulator | |||
| 5495 | M | M.EcoSCU176ORF13500P (100% identity) | GATC | M.SdyFF10ORF5495P |
| 5500 | replication endonuclease | |||
| 9175 | phosphohydrolase | |||
| 9180 | M | M.EcoXJ55DcmP (100% identity) | CCWGG | M.SdyFF10DcmP |
| 9185 | V | V.Eco51841DcmP (100% identity) | V.SdyFF10DcmP | |
| 9190 | drug/metabolite exporter YedA | |||
| 16705 | NinE family protein | |||
| 16710 | M | M.Sfl228ORF25835P (100% identity) | GATC | M.SdyFF10ORF16710P |
| 16715 | recombination protein NinB | |||
| 20050 | HNH endonuclease | |||
| 20055 | R | Ecost64ORF20040P (100% identity) | SdyFF10ORF20055P | |
| 20060 | McrC family protein | |||
| 21455 | phage lysis protein EssD | |||
| 21460 | M | M.Sso63633ORF22290P (100% identity) | M.SdyFF10ORF21460P | |
| 21465 | 67 aa hypothetical protein | |||
| 21490 | LexA family transcriptional regulator | |||
| 21495 | M | M.EmaC12ORF620P (100% identity) | GATC | M.SdyFF10ORF21495P |
| 21500 | PerC family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20055 | HNH endonuclease | |||
| 20060 | R | EcotcmA3McrCP (100% identity) | SdyFF10McrCP | |
| 20065 | R | SflSTLE4McrBP (100% identity) | SdyFF10McrBP | |
| 20070 | IS3-like element IS3 family transposase | |||