Shigella flexneri STEFF_12 |
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Putative Shigella flexneri STEFF_12 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,936,130 bp
GenBank #: CP055219
REBASE acronym: SflFF12
Org_num: 55439
All begin HUZ41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 17255 | endoribonuclease SymE | |||
| 17260 | S | S.EcoTO6ORF4125P (100% identity) | CATNNNNNNCTCC | S.SflFF12ORF17265P |
| 17265 | M | M.EcoTO6ORF4125P (100% identity) | CATNNNNNNCTCC | M.SflFF12ORF17265P |
| 17270 | R | Ecos671ORFCP (99% identity) | CATNNNNNNCTCC | SflFF12ORF17265P |
| 17275 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4095 | DUF1737 domain-containing protein | |||
| 4115 | M | M.Eco9062ORF1351P (100% identity) | M.SflFF12ORF4115P | |
| 4120 | IS21-like element ISEc10 family transposase | |||
| 4900 | drug/metabolite exporter YedA | |||
| 4905 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.SflFF12DcmP |
| 4910 | M | M.EcoLR171DcmP (100% identity) | CCWGG | M.SflFF12DcmP |
| 4915 | phosphohydrolase | |||
| 11735 | DNA-binding transcriptional regulator Fis | |||
| 11740 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflFF12ORF11740P |
| 11745 | DUF2556 family protein | |||
| 12365 | ribulose-phosphate 3-epimerase | |||
| 12370 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF12DamP |
| 12375 | cell division protein DamX | |||
| 21725 | recombination protein NinB | |||
| 21730 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.SflFF12ORF21730P |
| 21735 | NinE family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17245 | R | Ssp28760McrCP (100% identity) | SflFF12McrCP | |
| 17250 | R | Ssp28760McrBP (100% identity) | SflFF12McrBP | |
| 17255 | endoribonuclease SymE | |||
| 17270 | type I restriction-modification system | |||
| 17275 | R | Ssp28760MrrP (100% identity) | SflFF12MrrP | |
| 17280 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23255 | recombination protein NinB | |||
| 23260 | M | M.SflN97ORF8425P (100% identity) | GATC | M.SflFF12ORF23260P |
| 23265 | NinE family protein | |||