Shigella flexneri STEFF_17 |
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Putative Shigella flexneri STEFF_17 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,642,056 bp
GenBank #: CP055181
REBASE acronym: SflFF17
Org_num: 55441
All begin HUZ45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9160 | site-specific integrase | |||
| 9165 | M | M.EcoNT1F31ORF10715P (74% identity) | M.SflFF17ORF9165P | |
| 9170 | S | S1.SmaKC004ORF49070P (94% identity) | S1.SflFF17ORF9165P | |
| 9175 | IS5-like element IS5 family transposase | |||
| ??? | S | S2.EcoNT1F31ORF10715P (100% identity) | S2.SflFF17ORF9165P | |
| 9185 | YecA family protein | |||
| 9190 | R | EcoNT1F31ORF10715P (100% identity) | SflFF17ORF9165P | |
| 9195 | M48 family metallopeptidase | |||
| 19290 | DUF4942 domain-containing protein | |||
| 19295 | M | M.Eco01AORF23145P (100% identity) | M.SflFF17ORF19295P | |
| 19300 | S | S.Eco41C14ORF20990P (52% identity) | S.SflFF17ORF19295P | |
| 19305 | IS1 family transposase | |||
| 19310 | R | SspS13ORF3745P (57% identity) | SflFF17ORF19295P | |
| 19320 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1665 | cell division protein DamX | |||
| 1670 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF17DamP |
| 1675 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflFF17ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 8865 | phosphohydrolase | |||
| 8870 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflFF17DcmP |
| 8875 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflFF17DcmP |
| 8880 | drug/metabolite exporter YedA | |||
| 19270 | HNH endonuclease | |||
| 19275 | R | Ecows53ORF11425P (100% identity) | SflFF17ORF19275P | |
| 19280 | McrC family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19275 | HNH endonuclease | |||
| 19280 | R | Eco41C14McrC2P (100% identity) | SflFF17McrCP | |
| 19285 | R | SflSTLE4McrBP (100% identity) | SflFF17McrBP | |
| 19290 | DUF4942 domain-containing protein | |||