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Putative Shigella flexneri STEFF_18 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,904,858 bp
GenBank #: CP055179
REBASE acronym: SflFF18
Org_num: 55442
All begin HUZ46_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
20205 | transposase | |||
20210 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SflFF18ORF20215P |
20215 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SflFF18ORF20215P |
20220 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflFF18ORF20215P |
20225 | AAA family ATPase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1835 | cell division protein DamX | |||
1840 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF18DamP |
1845 | ribulose-phosphate 3-epimerase | |||
2390 | DUF2556 family protein | |||
2395 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflFF18ORF2395P |
2400 | DNA-binding transcriptional regulator Fis | |||
9230 | HD domain-containing protein | |||
9235 | M | M.SspPIBDcmP (100% identity) | CCWGG | M.SflFF18DcmP |
9240 | V | V.SflFF24DcmP (100% identity) | V.SflFF18DcmP | |
9245 | drug/metabolite exporter YedA | |||
14975 | replication endonuclease | |||
14980 | M | M.SflFF24ORF14980P (100% identity) | GATC | M.SflFF18ORF14980P |
14985 | TraR/DksA family transcriptional regulator | |||
19920 | HNH endonuclease | |||
19925 | R | SflFF24ORF19925P (100% identity) | SflFF18ORF19925P | |
19930 | 59 aa hypothetical protein | |||
20380 | osmoprotectant transport activator ProQ | |||
20385 | M | M.SflFF24DndBP (100% identity) | M.SflFF18DndBP | |
20390 | DNA phosphorothioation system sulfurtransferase | |||
20385 | DNA sulfur modification protein DndB | |||
20390 | M | M.SflFF24DndCP (100% identity) | M.SflFF18DndCP | |
20395 | DNA sulfur modification protein DndD | |||
20390 | DNA phosphorothioation system sulfurtransferase | |||
20395 | M | M.SflFF24DndDP (100% identity) | M.SflFF18DndDP | |
20400 | DNA sulfur modification protein DndE | |||
20395 | DNA sulfur modification protein DndD | |||
20400 | M | M.SflFF24DndEP (100% identity) | M.SflFF18DndEP | |
20405 | DGQHR domain-containing protein | |||
20415 | accessory gene regulator B family protein | |||
20420 | R | SflFF24DptHP (100% identity) | SflFF18DptHP | |
20425 | DNA phosphorothioation-dependent restriction | |||
20420 | DNA phosphorothioation-dependent restriction | |||
20425 | R | SflFF24DptGP (100% identity) | SflFF18DptGP | |
20430 | DNA phosphorothioation-dependent restriction | |||
20425 | DNA phosphorothioation-dependent restriction | |||
20430 | R | SflFF24DptFP (100% identity) | SflFF18DptFP | |
20435 | porin family protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
19690 | GTPase | |||
19695 | R | Ssp28760MrrP (100% identity) | SflFF18MrrP | |
19700 | type I restriction-modification system | |||
19715 | endoribonuclease SymE | |||
19720 | R | SflFF24McrBP (100% identity) | SflFF18McrBP | |
19725 | R | SflFF24McrCP (100% identity) | SflFF18McrCP |