Shigella flexneri STEFF_24 |
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Putative Shigella flexneri STEFF_24 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,904,839 bp
GenBank #: CP055167
REBASE acronym: SflFF24
Org_num: 55444
All begin HUZ50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20205 | transposase | |||
| 20210 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SflFF24ORF20215P |
| 20215 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SflFF24ORF20215P |
| 20220 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflFF24ORF20215P |
| 20225 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1835 | cell division protein DamX | |||
| 1840 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF24DamP |
| 1845 | ribulose-phosphate 3-epimerase | |||
| 2390 | DUF2556 family protein | |||
| 2395 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflFF24ORF2395P |
| 2400 | DNA-binding transcriptional regulator Fis | |||
| 9230 | HD domain-containing protein | |||
| 9235 | M | M.SspPIBDcmP (100% identity) | CCWGG | M.SflFF24DcmP |
| 9240 | V | V.SflFF18DcmP (100% identity) | V.SflFF24DcmP | |
| 9245 | drug/metabolite exporter YedA | |||
| 14975 | replication endonuclease | |||
| 14980 | M | M.SflFF18ORF14980P (100% identity) | GATC | M.SflFF24ORF14980P |
| 14985 | TraR/DksA family transcriptional regulator | |||
| 19920 | HNH endonuclease | |||
| 19925 | R | SflFF18ORF19925P (100% identity) | SflFF24ORF19925P | |
| 19930 | 59 aa hypothetical protein | |||
| 20380 | osmoprotectant transport activator ProQ | |||
| 20385 | M | M.SflFF18DndBP (100% identity) | M.SflFF24DndBP | |
| 20390 | DNA phosphorothioation system sulfurtransferase | |||
| 20385 | DNA sulfur modification protein DndB | |||
| 20390 | M | M.SflFF18DndCP (100% identity) | M.SflFF24DndCP | |
| 20395 | DNA sulfur modification protein DndD | |||
| 20390 | DNA phosphorothioation system sulfurtransferase | |||
| 20395 | M | M.SflFF18DndDP (100% identity) | M.SflFF24DndDP | |
| 20400 | DNA sulfur modification protein DndE | |||
| 20395 | DNA sulfur modification protein DndD | |||
| 20400 | M | M.SflFF18DndEP (100% identity) | M.SflFF24DndEP | |
| 20405 | DGQHR domain-containing protein | |||
| 20415 | accessory gene regulator B family protein | |||
| 20420 | R | SflFF18DptHP (100% identity) | SflFF24DptHP | |
| 20425 | DNA phosphorothioation-dependent restriction | |||
| 20420 | DNA phosphorothioation-dependent restriction | |||
| 20425 | R | SflFF18DptGP (100% identity) | SflFF24DptGP | |
| 20430 | DNA phosphorothioation-dependent restriction | |||
| 20425 | DNA phosphorothioation-dependent restriction | |||
| 20430 | R | SflFF18DptFP (100% identity) | SflFF24DptFP | |
| 20435 | porin family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19690 | GTPase | |||
| 19695 | R | Ssp28760MrrP (100% identity) | SflFF24MrrP | |
| 19700 | type I restriction-modification system | |||
| 19715 | endoribonuclease SymE | |||
| 19720 | R | SflFF18McrBP (100% identity) | SflFF24McrBP | |
| 19725 | R | SflFF18McrCP (100% identity) | SflFF24McrCP | |