Escherichia coli STEC1080 |
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Putative Escherichia coli STEC1080 RM systems
Ref: Pan,Y. et al. unpublished
REBASE ref # 33407
| Sequence length: | GenBank #: | |
| Chromosome: | 5,001,499 bp | CP061258 |
| plasmid pSTEC1018_1: | 124,103 bp | CP061259 |
| plasmid pSTEC1018_4: | 60,173 bp | CP061262 |
| plasmid pSTEC1018_5: | 89,560 bp | CP061263 |
REBASE acronym: EcoSTEC1080
Org_num: 53896
All begin H6S10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21625 | adenine/cytosine-specific restriction | |||
| 21630 | R | Eco9699IP (99% identity) | AACNNNNNNGTGC | EcoSTEC1080ORF21635P |
| 21635 | M | M.Kpn226ORF23745P (93% identity) | AACNNNNNNGTGC | M.EcoSTEC1080ORF21635P |
| 21640 | S | S.SenHNK130ORF17125P (99% identity) | AACNNNNNNGTGC | S.EcoSTEC1080ORF21635P |
| 21645 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2340 | DUF2556 family protein | |||
| 2345 | M | M.SspS13ORF21055P (99% identity) | ATGCAT | M.EcoSTEC1080ORF2345P |
| 2350 | DNA-binding transcriptional regulator Fis | |||
| 5960 | recombinase family protein | |||
| 5965 | M | M.EcoSTEC1025ORF18820P (100% identity) | M.EcoSTEC1080ORF5965P | |
| 5970 | phage tail sheath protein | |||
| 7635 | DUF1382 family protein | |||
| 7640 | M | M.EcoR9ORF13905P (100% identity) | GATC | M.EcoSTEC1080ORF7640P |
| 7645 | regulator | |||
| 9095 | PerC family transcriptional regulator | |||
| 9100 | M | M.SflFF35ORF16050P (66% identity) | M.EcoSTEC1080ORF9100P | |
| 9105 | RusA family crossover junction | |||
| 10240 | phosphohydrolase | |||
| 10245 | M | M.SflFF22DcmP (94% identity) | M.EcoSTEC1080DcmP | |
| 10250 | V | V.EcoES5DcmP (99% identity) | V.EcoSTEC1080DcmP | |
| 10255 | drug/metabolite exporter YedA | |||
| 13990 | DUF1804 family protein | |||
| 13995 | M | M.EcoSTEC1025ORF11580P (100% identity) | M.EcoSTEC1080ORF13995P | |
| 14000 | phage terminase large subunit | |||
| 15065 | cell envelope integrity protein TolA | |||
| 15080 | M | M.EcoTob1ORF18280P (83% identity) | M.EcoSTEC1080ORF15080P | |
| 15085 | TrmB family transcriptional regulator | |||
| 17025 | 103 aa hypothetical protein | |||
| 17030 | M | M.EcoSTEC1025ORF8800P (100% identity) | M.EcoSTEC1080ORF17030P | |
| 17035 | TrmB family transcriptional regulator | |||
| plasmid pSTEC1018_1 | ||||
| 25500 | 73 aa hypothetical protein | |||
| 25505 | M | M.Eco3277ORFJP (81% identity) | M.EcoSTEC1080ORF25505P | |
| 25510 | 103 aa hypothetical protein | |||
| plasmid pSTEC1018_4 | ||||
| 27915 | 97 aa hypothetical protein | |||
| 27920 | M | M.Eco2498ORF27770P (77% identity) | M.EcoSTEC1080ORF27920P | |
| 27925 | DUF1380 domain-containing protein | |||
| plasmid pSTEC1018_5 | ||||
| 28545 | 100 aa hypothetical protein | |||
| 28550 | M | M.EcoSTEC1025ORF26085P (97% identity) | M.EcoSTEC1080ORF28550P | |
| 28555 | 72 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSTEC1018_1 | ||||
| 26040 | TraM recognition domain-containing protein | |||
| 26045 | R | EcoC0186ORF25185P (99% identity) | EcoSTEC1080ORF26050P | |
| 26050 | M | M.Eco4404ORFIP (99% identity) | M.EcoSTEC1080ORF26050P | |
| 26060 | relaxase/mobilization nuclease domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21620 | GTPase | |||
| 21625 | R | SenHNK130MrrP (100% identity) | EcoSTEC1080MrrP | |
| 21630 | type I restriction-modification system | |||