Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10112 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10112 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,997,304 bp | CP047555 |
| plasmid unnamed: | 256,080 bp | CP047556 |
REBASE acronym: Sen10112
Org_num: 55350
All begin DXN18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9525 | endoribonuclease SymE | |||
| 9530 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10112ORF9535P |
| 9535 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10112ORF9535P |
| 9540 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10112ORF9535P |
| 9545 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40 | nuclease | |||
| 45 | M | M.StyCORF187P (49% identity) | M.Sen10112ORF45P | |
| 50 | IS6-like element IS26 family transposase | |||
| 3345 | DNA-binding transcriptional regulator Fis | |||
| 3350 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10112ORF3350P |
| 3355 | DUF2556 domain-containing protein | |||
| 3845 | ribulose-phosphate 3-epimerase | |||
| 3850 | M | M.StyTDamP (100% identity) | GATC | M.Sen10112DamP |
| 3855 | cell division protein DamX | |||
| 9375 | AAA family ATPase | |||
| 9380 | RM | StyUK1IV (100% identity) | GATCAG | Sen10112ORF9380P |
| 9385 | BREX system P-loop protein BrxC | |||
| 20160 | drug/metabolite exporter YedA | |||
| 20165 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10112DcmP |
| 20170 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10112DcmP |
| 20175 | phosphohydrolase | |||
| 20415 | RusA family crossover junction | |||
| 20420 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen10112ORF20420P |
| 20425 | PerC family transcriptional regulator | |||
| 23740 | 92 aa hypothetical protein | |||
| 23745 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10112ORF23745P |
| 23750 | ead/Ea22-like family protein | |||
| plasmid unnamed | ||||
| 24435 | DNA-binding protein | |||
| 24440 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10112ORF24440P |
| 24445 | 284 aa hypothetical protein | |||
| 24950 | DUF1173 family protein | |||
| 24955 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10112ORF24955P |
| 24960 | nuclease | |||
| 25620 | 108 aa hypothetical protein | |||
| 25625 | M | M.YpsF1ORFBP (100% identity) | M.Sen10112ORF25625P | |
| 25630 | 202 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12060 | MFS transporter | |||
| 12065 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10112ORF12065P |
| 12070 | R | StyUK1IP (99% identity) | CAGAG | Sen10112ORF12065P |
| 12075 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9540 | type I restriction-modification system | |||
| 9545 | R | StyUK1MrrP (100% identity) | Sen10112MrrP | |
| 9550 | BrnT family toxin | |||