Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10236 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10236 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,994,555 bp | CP047546 |
| plasmid unnamed: | 250,477 bp | CP047547 |
REBASE acronym: Sen10236
Org_num: 55353
All begin DXN28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20505 | restriction endonuclease | |||
| 20510 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10236ORF20515P |
| 20515 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10236ORF20515P |
| 20520 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10236ORF20515P |
| 20525 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.StyTDamP (100% identity) | GATC | M.Sen10236DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2320 | DUF2556 domain-containing protein | |||
| 2325 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10236ORF2325P |
| 2330 | DNA-binding transcriptional regulator Fis | |||
| 3240 | DUF2732 family protein | |||
| 3245 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen10236ORF3245P |
| 3250 | replication endonuclease | |||
| 5625 | IS6-like element IS26 family transposase | |||
| 5630 | M | M.StyCORF187P (49% identity) | M.Sen10236ORF5630P | |
| 5635 | nuclease | |||
| 6270 | ead/Ea22-like family protein | |||
| 6275 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10236ORF6275P |
| 6280 | 92 aa hypothetical protein | |||
| 9845 | phosphohydrolase | |||
| 9850 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10236DcmP |
| 9855 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10236DcmP |
| 9860 | drug/metabolite exporter YedA | |||
| 20665 | BREX system P-loop protein BrxC | |||
| 20670 | RM | StyUK1IV (100% identity) | GATCAG | Sen10236ORF20670P |
| 20675 | AAA family ATPase | |||
| plasmid unnamed | ||||
| 24940 | nuclease | |||
| 24945 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10236ORF24945P |
| 24950 | DUF1173 family protein | |||
| 25475 | 284 aa hypothetical protein | |||
| 25480 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10236ORF25480P |
| 25485 | DNA-binding protein | |||
| 25590 | 202 aa hypothetical protein | |||
| 25595 | M | M.YpsF1ORFBP (100% identity) | M.Sen10236ORF25595P | |
| 25600 | 108 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17975 | 33 aa hypothetical protein | |||
| 17980 | R | StyUK1IP (99% identity) | CAGAG | Sen10236ORF17985P |
| 17985 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10236ORF17985P |
| 17990 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20500 | BrnT family toxin | |||
| 20505 | R | StyUK1MrrP (100% identity) | Sen10236MrrP | |
| 20510 | type I restriction-modification system | |||