Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10405 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10405 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,917,130 bp | CP047537 |
| plasmid unnamedA: | 329,730 bp | CP047538 |
| plasmid unnamedB: | 88,993 bp | CP047539 |
REBASE acronym: Sen10405
Org_num: 55357
All begin DXN32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3865 | endoribonuclease SymE | |||
| 3870 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10405ORF3875P |
| 3875 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10405ORF3875P |
| 3880 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10405ORF3875P |
| 3885 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14100 | drug/metabolite exporter YedA | |||
| 14105 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10405DcmP |
| 14110 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10405DcmP |
| 14115 | phosphohydrolase | |||
| 14355 | RusA family crossover junction | |||
| 14360 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen10405ORF14360P |
| 14365 | PerC family transcriptional regulator | |||
| 17680 | 92 aa hypothetical protein | |||
| 17685 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10405ORF17685P |
| 17690 | ead/Ea22-like family protein | |||
| 18380 | nuclease | |||
| 18385 | M | M.StyCORF187P (49% identity) | M.Sen10405ORF18385P | |
| 18390 | IS6-like element IS26 family transposase | |||
| 20760 | replication endonuclease | |||
| 20765 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen10405ORF20765P |
| 20770 | DUF2732 family protein | |||
| 21680 | DNA-binding transcriptional regulator Fis | |||
| 21685 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10405ORF21685P |
| 21690 | DUF2556 domain-containing protein | |||
| 22180 | ribulose-phosphate 3-epimerase | |||
| 22185 | M | M.StyTDamP (100% identity) | GATC | M.Sen10405DamP |
| 22190 | cell division protein DamX | |||
| plasmid unnamedA | ||||
| 24310 | nuclease | |||
| 24315 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10405ORF24315P |
| 24320 | DUF1173 family protein | |||
| 24830 | 284 aa hypothetical protein | |||
| 24835 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10405ORF24835P |
| 24840 | DNA-binding protein | |||
| 24945 | 202 aa hypothetical protein | |||
| 24950 | M | M.YpsF1ORFBP (100% identity) | M.Sen10405ORF24950P | |
| 24955 | 108 aa hypothetical protein | |||
| plasmid unnamedB | ||||
| 25910 | 103 aa hypothetical protein | |||
| 25915 | M | M.Sso866ORF27155P (100% identity) | M.Sen10405ORF25915P | |
| 25920 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6400 | MFS transporter | |||
| 6405 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10405ORF6405P |
| 6410 | R | StyUK1IP (99% identity) | CAGAG | Sen10405ORF6405P |
| 6415 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3880 | type I restriction-modification system | |||
| 3885 | R | StyUK1MrrP (100% identity) | Sen10405MrrP | |
| 3890 | BrnT family toxin | |||