Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10452 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10452 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,779,995 bp | CP047535 |
| plasmid unnamed: | 243,126 bp | CP047536 |
REBASE acronym: Sen10452
Org_num: 55358
All begin DXN08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19480 | restriction endonuclease | |||
| 19485 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10452ORF19490P |
| 19490 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10452ORF19490P |
| 19495 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10452ORF19490P |
| 19500 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 885 | cell division protein DamX | |||
| 890 | M | M.StyTDamP (100% identity) | GATC | M.Sen10452DamP |
| 895 | ribulose-phosphate 3-epimerase | |||
| 1385 | DUF2556 domain-containing protein | |||
| 1390 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10452ORF1390P |
| 1395 | DNA-binding transcriptional regulator Fis | |||
| 2305 | DUF2732 family protein | |||
| 2310 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen10452ORF2310P |
| 2315 | replication endonuclease | |||
| 4690 | IS6-like element IS26 family transposase | |||
| 4695 | M | M.StyCORF187P (49% identity) | M.Sen10452ORF4695P | |
| 4700 | nuclease | |||
| 5270 | ead/Ea22-like family protein | |||
| 5275 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10452ORF5275P |
| 5280 | 92 aa hypothetical protein | |||
| 8595 | PerC family transcriptional regulator | |||
| 8600 | M | M.SenPS1ORF9505P (100% identity) | M.Sen10452ORF8600P | |
| 8605 | RusA family crossover junction | |||
| 8845 | phosphohydrolase | |||
| 8850 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10452DcmP |
| 8855 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10452DcmP |
| 8860 | drug/metabolite exporter YedA | |||
| plasmid unnamed | ||||
| 23390 | DNA-binding protein | |||
| 23395 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10452ORF23395P |
| 23400 | 284 aa hypothetical protein | |||
| 23910 | DUF1173 family protein | |||
| 23915 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10452ORF23915P |
| 23920 | nuclease | |||
| 24560 | 108 aa hypothetical protein | |||
| 24565 | M | M.YpsF1ORFBP (100% identity) | M.Sen10452ORF24565P | |
| 24570 | 202 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16950 | 33 aa hypothetical protein | |||
| 16955 | R | StyUK1IP (99% identity) | CAGAG | Sen10452ORF16960P |
| 16960 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10452ORF16960P |
| 16965 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19475 | BrnT family toxin | |||
| 19480 | R | StyUK1MrrP (100% identity) | Sen10452MrrP | |
| 19485 | type I restriction-modification system | |||