Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10484 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10484 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,892,507 bp | CP047531 |
| plasmid unnamedA: | 212,793 bp | CP047532 |
REBASE acronym: Sen10484
Org_num: 55359
All begin DXN09_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20450 | restriction endonuclease | |||
| 20455 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10484ORF20460P |
| 20460 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10484ORF20460P |
| 20465 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10484ORF20460P |
| 20470 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.StyTDamP (100% identity) | GATC | M.Sen10484DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2320 | DUF2556 domain-containing protein | |||
| 2325 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10484ORF2325P |
| 2330 | DNA-binding transcriptional regulator Fis | |||
| 3240 | DUF2732 family protein | |||
| 3245 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen10484ORF3245P |
| 3250 | replication endonuclease | |||
| 5625 | IS6-like element IS26 family transposase | |||
| 5630 | M | M.StyCORF187P (49% identity) | M.Sen10484ORF5630P | |
| 5635 | nuclease | |||
| 6245 | ead/Ea22-like family protein | |||
| 6250 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10484ORF6250P |
| 6255 | 92 aa hypothetical protein | |||
| 9570 | PerC family transcriptional regulator | |||
| 9575 | M | M.Ssp17155ORFIP (100% identity) | GATC | M.Sen10484ORF9575P |
| 9580 | RusA family crossover junction | |||
| 9820 | phosphohydrolase | |||
| 9825 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10484DcmP |
| 9830 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10484DcmP |
| 9835 | drug/metabolite exporter YedA | |||
| plasmid unnamedA | ||||
| 24325 | DUF1173 family protein | |||
| 24330 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10484ORF24330P |
| 24335 | nuclease | |||
| 24765 | 108 aa hypothetical protein | |||
| 24770 | M | M.YpsF1ORFBP (100% identity) | M.Sen10484ORF24770P | |
| 24775 | 202 aa hypothetical protein | |||
| 24880 | DNA-binding protein | |||
| 24885 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10484ORF24885P |
| 24890 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17920 | 33 aa hypothetical protein | |||
| 17925 | R | StyUK1IP (99% identity) | CAGAG | Sen10484ORF17930P |
| 17930 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10484ORF17930P |
| 17935 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20445 | BrnT family toxin | |||
| 20450 | R | StyUK1MrrP (100% identity) | Sen10484MrrP | |
| 20455 | type I restriction-modification system | |||