Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10648 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SJTUF10648 RM systems
Ref: Shang,D. et al. unpublished
REBASE ref # 33786
| Sequence length: | GenBank #: | |
| Chromosome: | 4,997,397 bp | CP047527 |
| plasmid unnamed: | 249,152 bp | CP047528 |
REBASE acronym: Sen10648
Org_num: 55361
All begin DXN11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3860 | endoribonuclease SymE | |||
| 3865 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen10648ORF3870P |
| 3870 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen10648ORF3870P |
| 3875 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen10648ORF3870P |
| 3880 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14495 | drug/metabolite exporter YedA | |||
| 14500 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen10648DcmP |
| 14505 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen10648DcmP |
| 14510 | phosphohydrolase | |||
| 14750 | RusA family crossover junction | |||
| 14755 | M | M.SenPS1ORF9505P (100% identity) | M.Sen10648ORF14755P | |
| 14760 | PerC family transcriptional regulator | |||
| 18075 | 92 aa hypothetical protein | |||
| 18080 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen10648ORF18080P |
| 18085 | ead/Ea22-like family protein | |||
| 18770 | nuclease | |||
| 18775 | M | M.StyCORF187P (49% identity) | M.Sen10648ORF18775P | |
| 18780 | IS6-like element IS26 family transposase | |||
| 21155 | replication endonuclease | |||
| 21160 | M | M.SensSZL38ORF19965P (100% identity) | GATC | M.Sen10648ORF21160P |
| 21165 | DUF2732 family protein | |||
| 22075 | DNA-binding transcriptional regulator Fis | |||
| 22080 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10648ORF22080P |
| 22085 | DUF2556 domain-containing protein | |||
| 22575 | ribulose-phosphate 3-epimerase | |||
| 22580 | M | M.StyTDamP (100% identity) | GATC | M.Sen10648DamP |
| 22585 | cell division protein DamX | |||
| plasmid unnamed | ||||
| 24885 | DUF1173 family protein | |||
| 24890 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen10648ORF24890P |
| 24895 | nuclease | |||
| 25555 | 108 aa hypothetical protein | |||
| 25560 | M | M.YpsF1ORFBP (100% identity) | M.Sen10648ORF25560P | |
| 25565 | 202 aa hypothetical protein | |||
| 25670 | DNA-binding protein | |||
| 25675 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Sen10648ORF25675P |
| 25680 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6395 | MFS transporter | |||
| 6400 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen10648ORF6400P |
| 6405 | R | StyUK1IP (99% identity) | CAGAG | Sen10648ORF6400P |
| 6410 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3875 | type I restriction-modification system | |||
| 3880 | R | StyUK1MrrP (100% identity) | Sen10648MrrP | |
| 3885 | BrnT family toxin | |||