Escherichia coli D16EC0480 |
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Putative Escherichia coli D16EC0480 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,985,906 bp | CP088598 |
| plasmid pD16EC0480-1: | 131,423 bp | CP088599 |
REBASE acronym: EcoC0480
Org_num: 53688
All begin LQQ94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22855 | endoribonuclease SymE | |||
| 22860 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0480ORF22870P |
| 22865 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0480ORF22870P |
| 22870 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0480ORF22870P |
| 22875 | restriction endonuclease | |||
| plasmid pD16EC0480-1 | ||||
| 24790 | IS1-like element IS1A family transposase | |||
| 24795 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC0480ORF24805P |
| 24800 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC0480ORF24805P |
| 24805 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC0480ORF24805P |
| 24810 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3665 | 71 aa hypothetical protein | |||
| 3670 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0480ORF3670P | |
| 3675 | helix-turn-helix domain-containing protein | |||
| 5960 | TrmB family transcriptional regulator | |||
| 5965 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0480ORF5965P |
| 5980 | DUF3927 family protein | |||
| 9525 | drug/metabolite exporter YedA | |||
| 9530 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0480DcmP |
| 9535 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0480DcmP |
| 9540 | phosphohydrolase | |||
| 16685 | DNA-binding transcriptional regulator Fis | |||
| 16690 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0480ORF16690P |
| 16695 | DUF2556 family protein | |||
| 17295 | ribulose-phosphate 3-epimerase | |||
| 17300 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0480DamP |
| 17305 | cell division protein DamX | |||
| 22490 | helix-turn-helix domain-containing protein | |||
| 22495 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0480ORF22495P |
| 22500 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0480ORF22495P |
| 22505 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0480ORF22495P |
| 22510 | McrC family protein | |||
| plasmid pD16EC0480-1 | ||||
| 24730 | 73 aa hypothetical protein | |||
| 24735 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0480ORF24735P |
| 24740 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22505 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 22510 | R | EcosS9McrCP (100% identity) | EcoC0480McrCP | |
| 22515 | R | EcosS3McrBP (100% identity) | EcoC0480McrBP | |
| 22520 | IS66 family insertion sequence hypothetical | |||