Escherichia coli E16EC0348 |
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Putative Escherichia coli E16EC0348 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,040,601 bp | CP088555 |
| plasmid pE16EC0348-1: | 38,649 bp | CP088556 |
| plasmid pE16EC0348-2: | 81,133 bp | CP088557 |
REBASE acronym: EcoC0348
Org_num: 53718
All begin LQQ68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19015 | type IV toxin-antitoxin system AbiEi family | |||
| 19020 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0348ORF19025P |
| 19025 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0348ORF19025P |
| 19030 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0348ORF19025P |
| 19035 | ash family protein | |||
| 21090 | restriction endonuclease | |||
| 21095 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0348ORF21095P |
| 21100 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0348ORF21095P |
| 21105 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0348ORF21095P |
| 21110 | endoribonuclease SymE | |||
| plasmid pE16EC0348-2 | ||||
| 25250 | type II toxin-antitoxin system Phd/YefM family | |||
| 25255 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoC0348ORF25255P |
| 25260 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoC0348ORF25255P |
| 25265 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoC0348ORF25255P |
| 25270 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2585 | DUF2556 family protein | |||
| 2590 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0348ORF2590P |
| 2595 | DNA-binding transcriptional regulator Fis | |||
| 6895 | DUF1382 family protein | |||
| 6900 | M | M.EcoB7S3ORF10380P (100% identity) | M.EcoC0348ORF6900P | |
| 6905 | DGQHR domain-containing protein | |||
| 6970 | 183 aa hypothetical protein | |||
| 6975 | M | M.Eco33137ORF11660P (100% identity) | M.EcoC0348ORF6975P | |
| 6980 | ead/Ea22-like family protein | |||
| 9960 | phosphohydrolase | |||
| 9965 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0348DcmP |
| 9970 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0348DcmP |
| 9975 | drug/metabolite exporter YedA | |||
| 13500 | DUF3927 family protein | |||
| 13515 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0348ORF13515P |
| 13520 | TrmB family transcriptional regulator | |||
| 19175 | phage lysis protein EssD | |||
| 19180 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0348ORF19180P | |
| 19185 | 95 aa hypothetical protein | |||
| 19220 | LexA family transcriptional regulator | |||
| 19225 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoC0348ORF19225P |
| 19230 | PerC family transcriptional regulator | |||
| 21440 | McrC family protein | |||
| 21445 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0348ORF21450P |
| 21450 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0348ORF21450P |
| 21455 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0348ORF21450P |
| 21460 | helix-turn-helix domain-containing protein | |||
| plasmid pE16EC0348-1 | ||||
| 24715 | 75 aa hypothetical protein | |||
| 24720 | M | M.EcoC0942ORF24515P (100% identity) | M.EcoC0348ORF24720P | |
| 24725 | phage holin family protein | |||
| plasmid pE16EC0348-2 | ||||
| 25320 | 103 aa hypothetical protein | |||
| 25325 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0348ORF25325P |
| 25330 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21430 | glycosyltransferase | |||
| 21435 | R | EcosS3McrBP (100% identity) | EcoC0348McrBP | |
| 21440 | R | EcosS9McrCP (100% identity) | EcoC0348McrCP | |
| 21445 | Alw26I/Eco31I/Esp3I family type II restriction | |||