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Putative Escherichia coli F16EC0455 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
Sequence length: | GenBank #: | |
Chromosome: | 5,255,579 bp | CP088406 |
plasmid pF16EC0455-1: | 141,127 bp | CP088404 |
REBASE acronym: EcoEC0455
Org_num: 53783
All begin LQT89_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
7960 | endoribonuclease SymE | |||
7965 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEC0455ORF7975P |
7970 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEC0455ORF7975P |
7975 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEC0455ORF7975P |
7980 | restriction endonuclease | |||
9790 | ash family protein | |||
9795 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0455ORF9800P |
9800 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0455ORF9800P |
9805 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0455ORF9800P |
9810 | type IV toxin-antitoxin system AbiEi family | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1845 | ribulose-phosphate 3-epimerase | |||
1850 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0455DamP |
1855 | cell division protein DamX | |||
6270 | conjugal transfer protein TraG N-terminal | |||
6275 | M | M.EcosS3ORF15775P (100% identity) | M.EcoEC0455ORF6275P | |
6280 | R | EcosS3ORF15775P (100% identity) | EcoEC0455ORF6275P | |
6285 | response regulator receiver domain | |||
7605 | helix-turn-helix domain-containing protein | |||
7610 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0455ORF7610P |
7615 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC0455ORF7610P |
7620 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoEC0455ORF7610BP |
7625 | IS3-like element ISEc52 family transposase | |||
7630 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoEC0455ORF7610AP |
7635 | McrC family protein | |||
13285 | 71 aa hypothetical protein | |||
13290 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0455ORF13290P | |
13295 | helix-turn-helix domain-containing protein | |||
15565 | TrmB family transcriptional regulator | |||
15570 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0455ORF15570P |
15585 | DUF3927 family protein | |||
18560 | TrmB family transcriptional regulator | |||
18565 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoEC0455ORF18575P |
18570 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoEC0455ORF18575P |
18575 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoEC0455ORF18575P |
18580 | antitermination protein | |||
19445 | drug/metabolite exporter YedA | |||
19450 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0455DcmP |
19455 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0455DcmP |
19460 | phosphohydrolase | |||
23195 | 121 aa hypothetical protein | |||
23200 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoEC0455ORF23205P |
23205 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoEC0455ORF23205P |
23210 | 257 aa hypothetical protein | |||
23335 | phage lysis protein EssD | |||
23340 | M | M.EcosR6ORF7985P (100% identity) | M.EcoEC0455ORF23340P | |
23345 | 95 aa hypothetical protein | |||
23380 | LexA family transcriptional regulator | |||
23385 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoEC0455ORF23385P |
23390 | PerC family transcriptional regulator | |||
27160 | DNA-binding transcriptional regulator Fis | |||
27165 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC0455ORF27165P |
27170 | DUF2556 family protein | |||
plasmid pF16EC0455-1 | ||||
855 | 73 aa hypothetical protein | |||
860 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoEC0455ORF860P |
865 | 103 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
7630 | 195 aa hypothetical protein | |||
7635 | R | EcosS9McrCP (100% identity) | EcoEC0455McrCP | |
7640 | R | EcosS3McrBP (100% identity) | EcoEC0455McrBP | |
7645 | glycosyltransferase |