Escherichia coli 438729 |
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Putative Escherichia coli 438729 RM systems
Ref: Greig,D.R. et al. unpublished
REBASE ref # 33271
Complete sequence: 5,555,235 bp
GenBank #: CP088069
REBASE acronym: Eco438729
Org_num: 53289
All begin E8R54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3400 | endoribonuclease SymE | |||
| 3405 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco438729ORF3410P |
| 3410 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco438729ORF3410P |
| 3415 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco438729ORF3410P |
| 3420 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1890 | 65 aa hypothetical protein | |||
| 1895 | M | M.EcosPA8ORF16100P (100% identity) | M.Eco438729ORF1895P | |
| 1900 | Eae protein | |||
| 3125 | transposase | |||
| 3130 | R | Ecos1613ORF26795P (100% identity) | Eco438729ORF3130P | |
| 3135 | N-acetylneuraminic acid mutarotase | |||
| 3165 | DEAD/DEAH box helicase | |||
| 3170 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco438729ORF3170P |
| 11500 | epoxyqueuosine reductase QueH | |||
| 11505 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M1.Eco438729ORF11505P |
| 11510 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco438729ORF11505P |
| 11515 | 90 aa hypothetical protein | |||
| 11520 | DUF968 domain-containing protein | |||
| 11525 | RusA family crossover junction | |||
| 11530 | antitermination protein | |||
| 11535 | TrmB family transcriptional regulator | |||
| 11540 | M | M.EcoZ910ORF13805P (100% identity) | M2.Eco438729ORF11505P | |
| 11545 | DUF1737 domain-containing protein | |||
| 13245 | DUF1737 domain-containing protein | |||
| 13260 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco438729ORF13260P | |
| 13265 | TrmB family transcriptional regulator | |||
| 15770 | drug/metabolite exporter YedA | |||
| 15775 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco438729DcmP |
| 15780 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco438729DcmP |
| 15785 | phosphohydrolase | |||
| 17870 | NinE family protein | |||
| 17875 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco438729ORF17875P |
| 17880 | recombination protein NinB | |||
| 20300 | NinE family protein | |||
| 20305 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco438729ORF20305P |
| 20310 | recombination protein NinB | |||
| 25215 | DNA-binding transcriptional regulator Fis | |||
| 25220 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco438729ORF25220P |
| 25225 | DUF2556 family protein | |||
| 25730 | ribulose-phosphate 3-epimerase | |||
| 25735 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco438729DamP |
| 25740 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3385 | DUF1127 domain-containing protein | |||
| 3390 | R | Ecos1613GmrSP (100% identity) | Eco438729GmrSP | |
| 3395 | R | EcosPA8GmrSDP (55% identity) | Eco438729GmrDP | |
| 3400 | endoribonuclease SymE | |||