Escherichia coli 804533 |
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Putative Escherichia coli 804533 RM systems
Ref: Greig,D.R. et al. unpublished
REBASE ref # 33271
| Sequence length: | GenBank #: | |
| Chromosome: | 5,554,866 bp | CP088030 |
| plasmid p804533: | 95,369 bp | CP088031 |
REBASE acronym: Eco804533
Org_num: 53574
All begin F3J64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3400 | endoribonuclease SymE | |||
| 3405 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco804533ORF3410P |
| 3410 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco804533ORF3410P |
| 3415 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco804533ORF3410P |
| 3420 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3125 | transposase | |||
| 3130 | R | Ecos1613ORF26795P (100% identity) | Eco804533ORF3130P | |
| 3135 | N-acetylneuraminic acid mutarotase | |||
| 3165 | DEAD/DEAH box helicase | |||
| 3170 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco804533ORF3170P |
| 11510 | epoxyqueuosine reductase QueH | |||
| 11515 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M1.Eco804533ORF11515P |
| 11520 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco804533ORF11515P |
| 11525 | 90 aa hypothetical protein | |||
| 11530 | DUF968 domain-containing protein | |||
| 11535 | RusA family crossover junction | |||
| 11540 | antitermination protein | |||
| 11545 | TrmB family transcriptional regulator | |||
| 11550 | M | M.EcoZ910ORF13805P (100% identity) | M2.Eco804533ORF11515P | |
| 11555 | DUF1737 domain-containing protein | |||
| 13280 | DUF1737 domain-containing protein | |||
| 13295 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco804533ORF13295P | |
| 13300 | TrmB family transcriptional regulator | |||
| 15820 | drug/metabolite exporter YedA | |||
| 15825 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco804533DcmP |
| 15830 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco804533DcmP |
| 15835 | phosphohydrolase | |||
| 17925 | NinE family protein | |||
| 17930 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco804533ORF17930P |
| 17935 | recombination protein NinB | |||
| 20365 | NinE family protein | |||
| 20370 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco804533ORF20370P |
| 20375 | recombination protein NinB | |||
| 25270 | DNA-binding transcriptional regulator Fis | |||
| 25275 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco804533ORF25275P |
| 25280 | DUF2556 family protein | |||
| 25785 | ribulose-phosphate 3-epimerase | |||
| 25790 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco804533DamP |
| 25795 | cell division protein DamX | |||
| plasmid p804533 | ||||
| 28340 | 101 aa hypothetical protein | |||
| 28345 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco804533ORF28345P | |
| 28350 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3385 | DUF1127 domain-containing protein | |||
| 3390 | R | Ecos1613GmrSP (100% identity) | Eco804533GmrSP | |
| 3395 | R | EcosPA8GmrSDP (55% identity) | Eco804533GmrDP | |
| 3400 | endoribonuclease SymE | |||