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Putative Helicobacter pylori FDAARGOS_1563 RM systems
Ref: Sproer,C. et al. unpublished
REBASE ref # 33120
Complete sequence: 1,652,995 bp
GenBank #: CP085947
REBASE acronym: Hpy1563
Org_num: 54093
All begin LK447_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2560 | cagY like domain protein | |||
2565 | S | S.HpyGORF1456P (100% identity) | S.Hpy1563ORF2570P | |
2570 | M | M.HpyGORF1456P (100% identity) | M.Hpy1563ORF2570P | |
2575 | R | HpyGORF1456P (100% identity) | Hpy1563ORF2570P | |
2580 | M48 family metallopeptidase | |||
5080 | RNA degradosome polyphosphate kinase | |||
5090 | S | S.HpyH021ORF2155P (99% identity) | CAGNNNNNTC | S.Hpy1563ORF5095P |
5095 | M | M.HpyGORF420P (98% identity) | CAGNNNNNTC | M.Hpy1563ORF5095P |
5100 | R | HpySW25ORF2150P (90% identity) | CAGNNNNNTC | Hpy1563ORF5095P |
5105 | motility associated factor glycosyltransferase | |||
6740 | outer membrane beta-barrel protein HofF | |||
6745 | S | S.HpyGORF746P (100% identity) | CTANNNNNNNTTG | S.Hpy1563ORF6745P |
6750 | cadmium-translocating P-type ATPase | |||
7040 | hydroxyethylthiazole kinase | |||
7045 | R | HpyGORF806P (100% identity) | CTANNNNNNNNTTG | Hpy1563ORF7055P |
7050 | S | S.HpyGORF806P (100% identity) | CTANNNNNNNNTTG | S.Hpy1563ORF7055P |
7055 | M | M.HpyGORF806P (100% identity) | CTANNNNNNNNTTG | M.Hpy1563ORF7055P |
7060 | type I restriction endonuclease subunit M | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
355 | acetyl-CoA carboxylase biotin carboxylase | |||
360 | M | M.HpyGI (100% identity) | TCNNGA | M.Hpy1563ORF360P |
365 | R | HpyU409XIVP (100% identity) | TCNNGA | Hpy1563ORF360P |
370 | Laminin subunit alpha-2 precursor | |||
545 | 144 aa hypothetical protein | |||
550 | M | M.HpyGIII (100% identity) | GCGC | M.Hpy1563ORF550P |
555 | flagellar biosynthesis anti-sigma factor FlgM | |||
1020 | HAD family hydrolase | |||
1025 | M | M.HpyGORF1155P (100% identity) | CATG | M.Hpy1563ORF1025P |
1030 | IceA2 protein | |||
1405 | glycosyltransferase family 9 protein | |||
1410 | M | M.HpyGORF1231P (100% identity) | GATATC | M.Hpy1563ORF1410P |
??? | R | HpyI012ORF6295P (100% identity) | GATATC | Hpy1563ORF1410P |
1425 | 68 aa hypothetical protein | |||
1760 | DNA methyltransferase | |||
1765 | R | HpyPR08IXP (100% identity) | GANTC | Hpy1563ORF1770P |
1770 | M | M.HpyGORF1301P (100% identity) | GANTC | M.Hpy1563ORF1770P |
1775 | N-6 DNA methylase | |||
1770 | site-specific DNA-methyltransferase | |||
1775 | RM | HpyGORF1302P (100% identity) | Hpy1563ORF1775P | |
1780 | carboxylating nicotinate-nucleotide | |||
2250 | DNA polymerase I | |||
2255 | S | S.HpyGORF1395P (100% identity) | S.Hpy1563ORF2260P | |
2260 | RM | HpyGORF1395P (100% identity) | CAANNNNNNTTG | Hpy1563ORF2260P |
2265 | ComF family protein | |||
2390 | LptF/LptG family permease | |||
2395 | M | M1.HpyGORF1422P (100% identity) | CCATC | M1.Hpy1563ORF2395P |
2400 | M | M2.HpyGORF1422P (100% identity) | CCATC | M2.Hpy1563ORF2395P |
2405 | R | HpyGORF1422P (100% identity) | CCATC | Hpy1563ORF2395P |
2410 | outer membrane protein | |||
2485 | SocA family protein | |||
2490 | RM | HpyGORF1441P (100% identity) | Hpy1563ORF2490P | |
2495 | type III restriction-modification system | |||
2650 | 67 aa hypothetical protein | |||
2655 | M | M.HpyGII (100% identity) | TGCA | M.Hpy1563ORF2655P |
2660 | R | HpySP17VP (99% identity) | TGCA | Hpy1563ORF2655P |
2665 | cytochrome c1 | |||
3175 | agmatine/peptidylarginine deiminase | |||
3180 | M | M1.HpyGORF44P (100% identity) | CCTC | M1.Hpy1563ORF3180P |
3185 | M | M2.HpyP105VP (98% identity) | CCTC | M2.Hpy1563ORF3180P |
3190 | R | HpyGE21VP (95% identity) | CCTC | Hpy1563ORF3180P |
3195 | restriction endonuclease | |||
3190 | HNH endonuclease | |||
3195 | R | HpyGORF49P (100% identity) | CCTTC | Hpy1563ORF3200P |
3200 | M | M.HpyGORF49P (100% identity) | CCTTC | M.Hpy1563ORF3200P |
3205 | sodium/proline symporter PutP | |||
3380 | ACP S-malonyltransferase | |||
3390 | R | HpyG012IXP (95% identity) | GATC | Hpy1563ORF3395P |
3395 | M | M.HpyGORF85P (100% identity) | GATC | M.Hpy1563ORF3395P |
3400 | alpha-(1,2)-fucosyltransferase FutC1 | |||
4185 | exodeoxyribonuclease VII large subunit | |||
4190 | M | M.HpyGORF239P (100% identity) | TCGA | M.Hpy1563ORF4190P |
4195 | 204 aa hypothetical protein | |||
4195 | 204 aa hypothetical protein | |||
4200 | R | HpyGORF242P (89% identity) | CCGG | Hpy1563ORF4205P |
4205 | M | M.HpyGORF242P (96% identity) | CCGG | M.Hpy1563ORF4205P |
4210 | AAA family ATPase | |||
4445 | polysaccharide deacetylase | |||
4450 | R | HpyGORF291P (100% identity) | CTNAG | Hpy1563ORF4455P |
4455 | M | M.HpyGORF291P (100% identity) | CTNAG | M.Hpy1563ORF4455P |
4460 | 122 aa hypothetical protein | |||
5175 | Hop family outer membrane protein HopJ/HopK | |||
5180 | M | M.HpyGORF436P (100% identity) | ATTAAT | M.Hpy1563ORF5180P |
5185 | glycosyltransferase family 9 protein | |||
5190 | translational GTPase TypA | |||
5195 | M | M.HpyGORF439P (100% identity) | ACNGT | M.Hpy1563ORF5195P |
5200 | R | Hpy030ORF2260P (99% identity) | ACNGT | Hpy1563ORF5195P |
5205 | DNA cytosine methyltransferase | |||
5200 | GIY-YIG nuclease family protein | |||
5205 | M | M.HpyGORF441P (100% identity) | ACGT | M.Hpy1563ORF5205P |
5210 | R | Hpy030ORF2270P (100% identity) | ACGT | Hpy1563ORF5205P |
5215 | catalase | |||
5305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
5310 | M | M.HpyGORF462P (100% identity) | GTAC | M.Hpy1563ORF5310P |
5315 | R | HpyNSH57I (98% identity) | GTAC | Hpy1563ORF5310P |
5320 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
6885 | osmoprotection protein | |||
6890 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1563ORF6895P |
6895 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy1563ORF6895P |
6900 | ABC transporter permease/substrate-binding | |||
7335 | flagellar hook protein FlgE | |||
7340 | R | HpyGORF861P (94% identity) | GTNNAC | Hpy1563ORF7345P |
7345 | M | M.HpyGORF861P (100% identity) | GTNNAC | M.Hpy1563ORF7345P |
7350 | ATP-dependent helicase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1830 | copper response regulator transcription factor | |||
1835 | M | M.HpyGORF1314P (100% identity) | M.Hpy1563ORF1835P | |
1840 | R | HpyGORF1314P (100% identity) | Hpy1563ORF1835P | |
1845 | rod shape-determining protein MreC | |||
1890 | DNA/RNA non-specific endonuclease | |||
1895 | M | M.HpyHPYORF7590P (95% identity) | M.Hpy1563ORF1895P | |
1900 | R | HpyGORF1327P (95% identity) | Hpy1563ORF1895P | |
1905 | biotin synthase | |||
2490 | Eco57I restriction-modification methylase | |||
2495 | R | HpyGORF1443P (100% identity) | Hpy1563ORF2500P | |
2500 | M | M.HpyGORF1443P (100% identity) | M.Hpy1563ORF2500P | |
2505 | ATP-dependent DNA helicase RecG | |||
5770 | 2-oxoacid:acceptor oxidoreductase family | |||
5775 | R | HpyGORF553P (100% identity) | GCAG | Hpy1563ORF5780P |
5780 | M | M.HpyGORF553P (100% identity) | GCAG | M.Hpy1563ORF5780P |
5785 | 54 aa hypothetical protein |