Salmonella enterica subsp. enterica serovar Typhimurium Raikou |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium Raikou RM systems
Ref: Huang,Y.T. unpublished
REBASE ref # 31747
Complete sequence: 4,790,182 bp
GenBank #: CP085809
REBASE acronym: SenRai
Org_num: 55346
All begin LJF43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3840 | endoribonuclease SymE | |||
| 3845 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.SenRaiORF3850P |
| 3850 | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.SenRaiORF3850P |
| 3855 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | SenRaiORF3850P |
| 3860 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 930 | replication endonuclease | |||
| 935 | M | M.StyTORF3409P (100% identity) | GATC | M.SenRaiORF935P |
| 940 | TraR/DksA family transcriptional regulator | |||
| 2610 | replication endonuclease | |||
| 2615 | M | M.StyTORF4329P (100% identity) | GATC | M.SenRaiORF2615P |
| 2620 | 3-5 exonuclease | |||
| 3710 | 64 aa hypothetical protein | |||
| 3715 | R | Senst12ORF9665P (100% identity) | SenRaiORF3715P | |
| 3720 | YebC/PmpR family DNA-binding transcriptional | |||
| 8710 | phosphohydrolase | |||
| 8715 | M | M.StyTDcmP (100% identity) | CCWGG | M.SenRaiDcmP |
| 8720 | V | V.StyTDcmP (100% identity) | CCWGG | V.SenRaiDcmP |
| 8725 | drug/metabolite exporter YedA | |||
| 13960 | DUF550 domain-containing protein | |||
| 13965 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.SenRaiORF13965P |
| 13970 | ead/Ea22-like family protein | |||
| 14025 | DGQHR domain-containing protein | |||
| 14030 | M | M.StyTORF1926P (95% identity) | M.SenRaiORF14030P | |
| 14035 | DUF4060 family protein | |||
| 20895 | DNA-binding transcriptional regulator Fis | |||
| 20900 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRaiORF20900P |
| 20905 | DUF2556 family protein | |||
| 21380 | ribulose-phosphate 3-epimerase | |||
| 21385 | M | M.StyTDamP (100% identity) | GATC | M.SenRaiDamP |
| 21390 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16950 | small effector SsaA | |||
| 16955 | R | StyTORF2507P (99% identity) | CAGAG | SenRaiORF16960P |
| 16960 | M | M.StyTORF2507P (100% identity) | CAGAG | M.SenRaiORF16960P |
| 16965 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3855 | type I restriction-modification system | |||
| 3860 | R | StyTMrrP (100% identity) | SenRaiMrrP | |
| 3865 | BrnT family toxin | |||