Escherichia coli EC32 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli EC32 RM systems
Ref: Shihan,Z. et al. Front Microbiol (2021) In press
REBASE ref # 33380
| Sequence length: | GenBank #: | |
| Chromosome: | 4,890,809 bp | CP085619 |
| plasmid pEC32-IncI1: | 88,542 bp | CP085621 |
| plasmid unnamed1: | 128,649 bp | CP085620 |
REBASE acronym: EcoEC32
Org_num: 53760
All begin LJN50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18260 | type IV toxin-antitoxin system AbiEi family | |||
| 18265 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC32ORF18270P |
| 18270 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC32ORF18270P |
| 18275 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC32ORF18270P |
| 18280 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC32ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9805 | phosphohydrolase | |||
| 9810 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoEC32DcmP |
| 9815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC32DcmP |
| 9820 | drug/metabolite exporter YedA | |||
| 19815 | 103 aa hypothetical protein | |||
| 19820 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoEC32ORF19820P | |
| 19825 | 73 aa hypothetical protein | |||
| 20340 | McrC family protein | |||
| 20345 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoEC32ORF20350P |
| 20350 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC32ORF20350P |
| 20355 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC32ORF20350P |
| 20360 | helix-turn-helix domain-containing protein | |||
| 20625 | 174 aa hypothetical protein | |||
| 20630 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoEC32ORF20630P |
| 20635 | ATP-binding protein | |||
| 20640 | 607 aa hypothetical protein | |||
| 20645 | R | Ecos19ORF20635P (100% identity) | EcoEC32ORF20645P | |
| 20650 | 97 aa hypothetical protein | |||
| plasmid pEC32-IncI1 | ||||
| 24755 | 103 aa hypothetical protein | |||
| 24760 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoEC32ORF24760P | |
| 24765 | 73 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 24560 | 73 aa hypothetical protein | |||
| 24565 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoEC32ORF24565P |
| 24570 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20330 | glycosyltransferase | |||
| 20335 | R | EcosS3McrBP (100% identity) | EcoEC32McrBP | |
| 20340 | R | EcosS9McrCP (100% identity) | EcoEC32McrCP | |
| 20345 | Alw26I/Eco31I/Esp3I family type II restriction | |||