Escherichia coli NDM3 |
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Putative Escherichia coli NDM3 RM systems
Ref: Simner,P. et al. unpublished
REBASE ref # 33390
| Sequence length: | GenBank #: | |
| Chromosome: | 4,738,304 bp | CP083880 |
| plasmid unnamed1: | 159,955 bp | CP083881 |
REBASE acronym: EcoNDM3
Org_num: 53815
All begin LCE26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9305 | IS1 family transposase | |||
| 9310 | R | EcosNDM5ORF9185P (100% identity) | EcoNDM3ORF9310P | |
| 9315 | M48 family metallopeptidase | |||
| 17580 | GTPase family protein | |||
| 17585 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | M.EcoNDM3ORF17585P |
| 17590 | S | S.EcosNDM5ORF17455P (100% identity) | AAAYNNNNNCTC | S.EcoNDM3ORF17585P |
| 17595 | R | Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | EcoNDM3ORF17585P |
| 17600 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 390 | ProQ/FinO family protein | |||
| 395 | M | M.SflFF24DndBP (100% identity) | M.EcoNDM3DndBP | |
| 400 | DNA phosphorothioation system sulfurtransferase | |||
| 395 | DNA sulfur modification protein DndB | |||
| 400 | M | M.SflFF24DndCP (100% identity) | M.EcoNDM3DndCP | |
| 405 | DNA sulfur modification protein DndD | |||
| 400 | DNA phosphorothioation system sulfurtransferase | |||
| 405 | M | M.SflFF24DndDP (100% identity) | M.EcoNDM3DndDP | |
| 410 | DNA sulfur modification protein DndE | |||
| 405 | DNA sulfur modification protein DndD | |||
| 410 | M | M.SflFF24DndEP (100% identity) | M.EcoNDM3DndEP | |
| 415 | DNA phosphorothioation-associated DGQHR protein | |||
| 420 | 172 aa hypothetical protein | |||
| 425 | R | Sen8497DptHP (100% identity) | EcoNDM3DptHP | |
| 430 | DNA phosphorothioation-dependent restriction | |||
| 425 | DNA phosphorothioation-dependent restriction | |||
| 430 | R | Sen8497DptGP (100% identity) | EcoNDM3DptGP | |
| 435 | DNA phosphorothioation-dependent restriction | |||
| 430 | DNA phosphorothioation-dependent restriction | |||
| 435 | R | SenLY67DptFP (100% identity) | EcoNDM3DptFP | |
| 440 | integrase | |||
| 2500 | 26 aa hypothetical protein | |||
| 2505 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoNDM3ORF2505P |
| 2510 | DNA-binding transcriptional regulator Fis | |||
| 8990 | phosphohydrolase | |||
| 8995 | M | M.EcosNDM5DcmP (100% identity) | CCWGG | M.EcoNDM3DcmP |
| 9000 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoNDM3DcmP |
| 9005 | drug/metabolite exporter YedA | |||
| 17805 | LexA family transcriptional regulator | |||
| 17810 | M | M.Sso8ORF17910P (100% identity) | GATC | M.EcoNDM3ORF17810P |
| 17815 | PerC family transcriptional regulator | |||
| 19670 | HNH endonuclease | |||
| 19675 | R | Sso8ORF19860P (100% identity) | EcoNDM3ORF19675P | |
| 19680 | 55 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23165 | 103 aa hypothetical protein | |||
| 23170 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoNDM3ORF23170P |
| 23175 | 73 aa hypothetical protein | |||