Escherichia coli CX04 |
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Putative Escherichia coli CX04 RM systems
Ref: Yang,X. et al. unpublished
REBASE ref # 33263
| Sequence length: | GenBank #: | |
| Chromosome: | 4,949,012 bp | CP081713 |
| plasmid unnamed3: | 37,667 bp | CP081716 |
| plasmid unnamed5: | 16,403 bp | CP081717 |
REBASE acronym: EcoCX04
Org_num: 53671
All begin J6O07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5555 | IS1 family transposase | |||
| 5560 | R | KpnY516ORF19290P (100% identity) | EcoCX04ORF5570P | |
| 5565 | S | S.EcoFec10II (76% identity) | S.EcoCX04ORF5570P | |
| 5570 | M | M.Kpn80147ORFIP (98% identity) | M.EcoCX04ORF5570P | |
| 5575 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2585 | DUF2556 family protein | |||
| 2590 | M | M.EcoPO3ORF2605P (100% identity) | ATGCAT | M.EcoCX04ORF2590P |
| 2595 | DNA-binding transcriptional regulator Fis | |||
| 8330 | conserved phage C-terminal domain-containing | |||
| 8335 | M | M.EcoNIH4ORF26475P (99% identity) | M1.EcoCX04ORF8335P | |
| 8340 | M | M2.EcoCX21ORF8550P (100% identity) | M2.EcoCX04ORF8335P | |
| 8345 | phage antirepressor KilAC domain-containing | |||
| 8360 | TrmB family transcriptional regulator | |||
| 8365 | M | M.EcoCX21ORF8580P (100% identity) | M.EcoCX04ORF8365P | |
| 8370 | 100 aa hypothetical protein | |||
| 9885 | phosphohydrolase | |||
| 9890 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoCX04DcmP |
| 9895 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoCX04DcmP |
| 9900 | drug/metabolite exporter YedA | |||
| 14050 | DUF1317 domain-containing protein | |||
| ??? | M | M.EcoCX21ORF14270P (100% identity) | M.EcoCX04ORF14055P | |
| 14060 | DUF4060 family protein | |||
| 19075 | LexA family transcriptional regulator | |||
| 19080 | M | M.EcoT43ORF5845P (100% identity) | GATC | M.EcoCX04ORF19080P |
| 19085 | PerC family transcriptional regulator | |||
| 22275 | phage holin, lambda family | |||
| 22280 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoCX04ORF22280P | |
| 22285 | 67 aa hypothetical protein | |||
| 22310 | LexA family transcriptional regulator | |||
| 22315 | M | M.EcoW102ORF22410P (100% identity) | GATC | M.EcoCX04ORF22315P |
| 22320 | PerC family transcriptional regulator | |||
| plasmid unnamed3 | ||||
| 25690 | RusA family crossover junction | |||
| 25695 | M | M.EcoGRORF22720P (67% identity) | M.EcoCX04ORF25695P | |
| 25700 | transcriptional regulator | |||
| plasmid unnamed5 | ||||
| 25830 | phage holin, lambda family | |||
| 25835 | M | M.Eco730V1ORF23415P (93% identity) | M.EcoCX04ORF25835P | |
| 25840 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3560 | inovirus Gp2 family protein | |||
| 3565 | R | Kox87739ORFCP (99% identity) | EcoCX04ORF3570P | |
| 3570 | M | M.Sen5006ORF16245P (100% identity) | M.EcoCX04ORF3570P | |
| 3575 | Cd(II)/Pb(II)-responsive transcriptional | |||
| 9770 | prepilin-type N-terminal cleavage/methylation | |||
| 9775 | R | EcoZ137ORF8170P (88% identity) | CCGAG | EcoCX04ORF9800BP |
| 9780 | IS66 family insertion sequence hypothetical | |||
| 9785 | IS66 family insertion sequence element accessory | |||
| 9790 | IS66 family transposase | |||
| 9795 | R | KquC3001ORF9710P (11% identity) | CCGAG | EcoCX04ORF9800AP |
| 9800 | M | M.EcoCX21ORF10015P (100% identity) | CCGAG | M.EcoCX04ORF9800P |
| 9805 | SpnT protein | |||