|
Putative Helicobacter pylori #8 RM systems
Ref: Ichihara,A. et al. Toxins (Basel) 13, 1-10 (2021)
REBASE ref # 32761
Complete sequence: 1,668,167 bp
GenBank #: AP024965
REBASE acronym: Hpys8
Org_num: 50849
All begin OHP008_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1180 | 303 aa hypothetical protein | |||
1190 | S | S.Hpy1766ORFCP (97% identity) | S.Hpys8ORF1200P | |
1200 | M | M.HpyP30ORFHP (64% identity) | M.Hpys8ORF1200BP | |
1210 | M | M.HpyOK95ORFFAP (62% identity) | M.Hpys8ORF1200AP | |
1220 | R | HpySG36ORF7345P (72% identity) | Hpys8ORF1200AP | |
1230 | R | HpyUM038ORF880P (24% identity) | Hpys8ORF1200BP | |
1240 | metal-dependent hydrolase | |||
5610 | 155 aa hypothetical protein | |||
5620 | M | M.HpyK032ORF5695P (100% identity) | M.Hpys8ORF5620P | |
5630 | 65 aa hypothetical protein | |||
6260 | phosphatase PAP2 family protein | |||
6270 | M | M.HpySG36ORF4175P (96% identity) | M.Hpys8ORF6270P | |
6280 | S | S.Hpys8ORF6840P (97% identity) | S.Hpys8ORF6270P | |
6290 | R | HpyK021XIIP (98% identity) | Hpys8ORF6270P | |
6300 | hydroxyethylthiazole kinase | |||
6830 | cadmium, zinc and cobalt-transporting ATPase | |||
6840 | S | S.Hpys8ORF6270P (97% identity) | TAAANNNNNNNTGG | S.Hpys8ORF6840P |
6850 | 42 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
310 | 149 aa hypothetical protein | |||
320 | RM | HpyJO5XX (58% identity) | Hpys8ORF320P | |
330 | IS200/IS605 family transposase | |||
990 | amidophosphoribosyltransferase | |||
1000 | RM | Hpyfe71ORF275P (98% identity) | Hpys8ORF1000P | |
1010 | S | S.HpyF221ORFTP (96% identity) | S.Hpys8ORF1000P | |
1020 | DNA polymerase I | |||
1420 | sodium/proline symporter | |||
1430 | M | M1.HpyP87ORFJP (63% identity) | M.Hpys8ORF1430P | |
1440 | agmatine deiminase | |||
2400 | ubiquinol cytochrome c oxidoreductase cytochrome | |||
2410 | R | Hpy192ORFSP (99% identity) | TGCA | Hpys8ORF2420P |
2420 | M | M.Hpyfe68ORF7355P (99% identity) | TGCA | M.Hpys8ORF2420P |
2430 | 67 aa hypothetical protein | |||
2840 | HrgA protein | |||
??? | M | M.Hpyfe48ORF6625P (97% identity) | M.Hpys8ORF2850P | |
2860 | 146 aa hypothetical protein | |||
4460 | exodeoxyribonuclease 7 large subunit | |||
4470 | M | M.HpyK032IV (100% identity) | TCGA | M.Hpys8ORF4470P |
4480 | 204 aa hypothetical protein | |||
4480 | 204 aa hypothetical protein | |||
??? | R | HpyK116IIP (99% identity) | CCGG | Hpys8ORF4510P |
4510 | M | M.HpyK115III (100% identity) | CCGG | M.Hpys8ORF4510P |
4520 | chaperone protein ClpB | |||
4980 | peptidoglycan deacetylase | |||
4990 | R | HpySP601VP (71% identity) | Hpys8ORF5020P | |
5000 | 92 aa hypothetical protein | |||
5010 | 290 aa hypothetical protein | |||
5020 | M | M.Hpyfe53ORF5510P (60% identity) | M.Hpys8ORF5020P | |
5030 | 125 aa hypothetical protein | |||
5400 | elongation factor 4 | |||
5410 | M | M.Hpyfe118ORF5530P (100% identity) | M.Hpys8ORF5410P | |
5420 | 156 aa hypothetical protein | |||
8910 | DNA helicase | |||
8920 | M | M.HpyCHN3VIII (97% identity) | GTNNAC | M.Hpys8ORF8920P |
8930 | R | HpyK023XP (94% identity) | GTNNAC | Hpys8ORF8920P |
8940 | flagellar basal body protein | |||
9250 | 51 aa hypothetical protein | |||
9260 | M | M.HpyK032VIII (58% identity) | M.Hpys8ORF9260P | |
9270 | R | HpyK032VIIIP (88% identity) | Hpys8ORF9260P | |
9280 | membrane protein | |||
10930 | glycolate oxidase iron-sulfur subunit | |||
10940 | RM | Hpyfe61ORF4005P (59% identity) | Hpys8ORF10940AP | |
10950 | RM | HpyUM085ORF1870P (29% identity) | Hpys8ORF10940BP | |
10960 | membrane protein | |||
11560 | 97 aa hypothetical protein | |||
??? | R | HpyLI29ORF2245P (98% identity) | ACNGT | Hpys8ORF11590P |
11590 | M | M.HpyMKM5ORF494P (99% identity) | ACNGT | M.Hpys8ORF11590P |
11600 | GTP-binding protein TypA/BipA | |||
11610 | 282 aa hypothetical protein | |||
??? | M | M.HpyK032ORF5555P (98% identity) | ATTAAT | M.Hpys8ORF11620P |
11640 | membrane protein | |||
12760 | acetyl-CoA carboxylase biotin carboxylase | |||
12770 | M | M.HpyK032X (100% identity) | TCNNGA | M.Hpys8ORF12770P |
12780 | R | HpyK032XP (99% identity) | TCNNGA | Hpys8ORF12770P |
12790 | 197 aa hypothetical protein | |||
13120 | 144 aa hypothetical protein | |||
13130 | M | M.HpyOK88ORFC1P (100% identity) | M.Hpys8ORF13130P | |
13140 | 67 aa hypothetical protein | |||
14010 | hydrolase | |||
14020 | M | M.HpyK032I (100% identity) | CATG | M.Hpys8ORF14020P |
??? | R | HpyK032IP (75% identity) | CATG | Hpys8ORF14020P |
14040 | serine acetyltransferase | |||
15420 | protease | |||
15430 | R | HpyK032XIP (99% identity) | GANTC | Hpys8ORF15440P |
15440 | M | M.HpyV007VI (99% identity) | GANTC | M.Hpys8ORF15440P |
15450 | 44 aa hypothetical protein | |||
15560 | DNA-binding response regulator | |||
15570 | R | HpyK045VIP (29% identity) | Hpys8ORF15610P | |
15580 | IS200/IS605 family transposase | |||
15590 | transposase | |||
15600 | 69 aa hypothetical protein | |||
15610 | M | M1.HpyK032XII (99% identity) | GAAGA | M1.Hpys8ORF15610P |
15620 | M | M2.HpyK005VII (77% identity) | M2.Hpys8ORF15610P | |
15630 | 48 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
60 | ATP-dependent DNA helicase RecG | |||
??? | M | M.Hpy3sORF40P (96% identity) | M.Hpys8ORF70P | |
100 | R | HpyK154ORF40P (97% identity) | Hpys8ORF70P | |
110 | 150 aa hypothetical protein | |||
480 | biotin synthase | |||
490 | R | HpyL029ORF7035P (64% identity) | Hpys8ORF530AP | |
500 | transposase | |||
510 | IS200/IS605 family transposase | |||
520 | R | HpyHP89ORF6780P (27% identity) | Hpys8ORF530BP | |
530 | M | M.Hpyfe118ORF810P (93% identity) | M.Hpys8ORF530P | |
540 | 287 aa hypothetical protein | |||
630 | rod shape-determining protein MreC | |||
??? | R | Hpyfe15ORF6875P (95% identity) | Hpys8ORF660P | |
660 | M | M.Hpybs3ORFVP (88% identity) | M.Hpys8ORF660P | |
670 | transposase |