Escherichia coli Ec55 |
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Putative Escherichia coli Ec55 RM systems
Ref: Mahazu,S. et al. unpublished
REBASE ref # 32719
| Sequence length: | GenBank #: | |
| Chromosome: | 5,216,726 bp | CP059130 |
| plasmid pEc55_1: | 167,739 bp | CP059131 |
REBASE acronym: EcoEc55
Org_num: 50662
All begin H0X92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1035 | helix-turn-helix domain-containing protein | |||
| 1040 | M | M.Pre393ORF2750P (100% identity) | M.EcoEc55ORF1040P | |
| 1045 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoEc55ORF1040P | |
| 1050 | RecQ family ATP-dependent DNA helicase | |||
| 1055 | DNA-processing protein DprA | |||
| 1060 | IS3-like element ISEc52 family transposase | |||
| 1065 | R | EcotcmA3ORF16550P (93% identity) | EcoEc55ORF1040P | |
| 1070 | IS3-like element ISSen4 family transposase | |||
| 3290 | endoribonuclease SymE | |||
| 3295 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEc55ORF3305P |
| 3300 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEc55ORF3305P |
| 3305 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEc55ORF3305P |
| 3310 | restriction endonuclease | |||
| 5100 | ash family protein | |||
| 5105 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEc55ORF5110P |
| 5110 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEc55ORF5110P |
| 5115 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEc55ORF5110P |
| 5120 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2950 | helix-turn-helix domain-containing protein | |||
| 2955 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoEc55ORF2955P |
| 2960 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEc55ORF2955P |
| 2965 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoEc55ORF2955P |
| 2970 | McrC family protein | |||
| 8570 | 71 aa hypothetical protein | |||
| 8575 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEc55ORF8575P | |
| 8580 | helix-turn-helix transcriptional regulator | |||
| 10800 | TrmB family transcriptional regulator | |||
| 10805 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEc55ORF10805P |
| 10820 | DUF3927 family protein | |||
| 14295 | drug/metabolite exporter YedA | |||
| 14300 | V | V.SflC32DcmP (74% identity) | V.EcoEc55DcmP | |
| 14305 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEc55DcmP |
| 14310 | phosphohydrolase | |||
| 16730 | phage terminase large subunit | |||
| 16735 | M | M.EspP049ORF3912P (100% identity) | M.EcoEc55ORF16735P | |
| 16740 | DUF1804 family protein | |||
| 17605 | PerC family transcriptional regulator | |||
| 17610 | M | M.Esp911AORF3194P (100% identity) | M.EcoEc55ORF17610P | |
| 17615 | serine/threonine protein phosphatase | |||
| 21900 | DNA-binding transcriptional regulator Fis | |||
| 21905 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEc55ORF21905P |
| 21910 | DUF2556 family protein | |||
| 22500 | ribulose-phosphate 3-epimerase | |||
| 22505 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEc55DamP |
| 22510 | cell division protein DamX | |||
| plasmid pEc55_1 | ||||
| 26230 | 73 aa hypothetical protein | |||
| 26235 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEc55ORF26235P |
| 26240 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2965 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 2970 | R | EcosS9McrCP (100% identity) | EcoEc55McrCP | |
| 2975 | R | EcosS3McrBP (100% identity) | EcoEc55McrBP | |
| 2980 | glycosyltransferase family 2 protein | |||