Clostridioides difficile S-0352 |
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Putative Clostridioides difficile S-0352 RM systems
Ref: O'Grady,K.I. unpublished
REBASE ref # 32667
Complete sequence: 4,251,987 bp
GenBank #: CP076377
REBASE acronym: CdiS0352
Org_num: 50467
All begin KNZ78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12220 | DUF262 domain-containing HNH endonuclease family | |||
| 12225 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | CdiS0352ORF12250P |
| 12230 | 142 aa hypothetical protein | |||
| 12235 | nucleotidyltransferase domain-containing | |||
| 12240 | 102 aa hypothetical protein | |||
| 12245 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.CdiS0352ORF12250P |
| 12250 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.CdiS0352ORF12250P |
| 12255 | tagatose-bisphosphate aldolase subunit GatY | |||
| 12760 | 56 aa hypothetical protein | |||
| 12765 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiS0352ORF12780P |
| 12770 | 423 aa hypothetical protein | |||
| 12775 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiS0352ORF12780P |
| 12780 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.CdiS0352ORF12780P |
| 12785 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1350 | 58 aa hypothetical protein | |||
| 1355 | M | M.Pdi30ORF7740P (100% identity) | M.CdiS0352ORF1355P | |
| 1360 | 73 aa hypothetical protein | |||
| 4240 | 120 aa hypothetical protein | |||
| 4245 | M | M.CdiRT010ORF870P (100% identity) | M.CdiS0352ORF4245P | |
| 4250 | 65 aa hypothetical protein | |||
| 10800 | patatin-like phospholipase family protein | |||
| 10805 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiS0352ORF10805P |
| 10810 | Rrf2 family transcriptional regulator | |||
| 11915 | CHAP domain-containing protein | |||
| 11920 | M | M.Sin30303ORF6845P (100% identity) | M.CdiS0352ORF11920P | |
| 11925 | ATP-binding protein | |||
| 12600 | class B sortase | |||
| 12605 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiS0352ORF12605P |
| 12610 | DrmE family protein | |||
| 12680 | 383 aa hypothetical protein | |||
| 12685 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiS0352ORF12685P |
| 12690 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.CdiS0352ORF12685P |
| 12695 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7155 | sigma 54-interacting transcriptional regulator | |||
| 7160 | R | Pdi30McrCP (100% identity) | CdiS0352McrCP | |
| 7165 | R | Pdi30McrBP (100% identity) | CdiS0352McrBP | |
| 7170 | cell division protein | |||